PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00000580001 | ||||||||
Common Name | GSBRNA2T00000580001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 181aa MW: 20550.8 Da PI: 10.1021 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 127.2 | 1.3e-39 | 6 | 135 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 p+GfrF Pt+ el+++yL+ +++g + ++++ i+ +d+++veP +Lp+ +++++ ++w fF++r++++a+g r++r+t gyWkatg GSBRNA2T00000580001 6 PVGFRFYPTEVELISFYLRFQLNGGNATIHSLIPILDVFSVEPTQLPNlageRCRGDAEQWLFFVPRQEREARGGRPSRTTGLGYWKATG 95 89***************************999**************9656766667888******************************* PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 + +v+s +++++g+kkt+vfy g+ap+g+kt+W m+ey+ GSBRNA2T00000580001 96 SPGPVFSPENRVIGVKKTMVFYIGKAPTGRKTKWKMNEYK 135 ***************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.66E-41 | 3 | 141 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 41.544 | 5 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-19 | 6 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MEHEIPVGFR FYPTEVELIS FYLRFQLNGG NATIHSLIPI LDVFSVEPTQ LPNLAGERCR 60 GDAEQWLFFV PRQEREARGG RPSRTTGLGY WKATGSPGPV FSPENRVIGV KKTMVFYIGK 120 APTGRKTKWK MNEYKGIDET ASVSTIPKVP SYIFKVHIFF KVTFSQILFV LNHLKFSFDL 180 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-31 | 2 | 135 | 12 | 139 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00000580001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013626236.1 | 1e-107 | PREDICTED: putative NAC domain-containing protein 61 | ||||
Refseq | XP_013642722.1 | 1e-107 | putative NAC domain-containing protein 61 | ||||
Swissprot | Q9M290 | 5e-95 | NAC61_ARATH; Putative NAC domain-containing protein 61 | ||||
TrEMBL | A0A078FA68 | 1e-130 | A0A078FA68_BRANA; BnaC03g54890D protein | ||||
STRING | Bo3g122200.1 | 1e-106 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1445 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44350.2 | 2e-97 | NAC domain containing protein 61 |
Publications ? help Back to Top | |||
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