PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00000394001
Common NameGSBRNA2T00000394001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 456aa    MW: 51138.2 Da    PI: 6.0054
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00000394001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.52.3e-52321591128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          l+pGfrFhPtdeelv++yLk+kv gk++++ ++i +vdiyk+ePwdL   +++k++++ewyf+s  dkky +g r nrat++gyWkatgk
  GSBRNA2T00000394001  32 LAPGFRFHPTDEELVSYYLKRKVMGKPVRF-DAIGDVDIYKHEPWDLAvfSRLKTRDQEWYFYSALDKKYGNGARMNRATNKGYWKATGK 120
                          579************************999.99**************8544899999********************************* PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d+e+ + + +l g+kktLvf++grap+g +t+Wvmheyrl
  GSBRNA2T00000394001 121 DREIRR-DIQLLGMKKTLVFHSGRAPDGLRTNWVMHEYRL 159
                          *****9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-5925184IPR003441NAC domain
PROSITE profilePS5100557.24432183IPR003441NAC domain
PfamPF023658.6E-2734159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MGRESVAVVS SPPTATATAT ARGTATVAAT SLAPGFRFHP TDEELVSYYL KRKVMGKPVR  60
FDAIGDVDIY KHEPWDLAVF SRLKTRDQEW YFYSALDKKY GNGARMNRAT NKGYWKATGK  120
DREIRRDIQL LGMKKTLVFH SGRAPDGLRT NWVMHEYRLV DYETESNGNL VQDAYVLCRV  180
FHKNNIGPPS GNRYAPFLEE EWADEGVALI PGVDVRVRAE PLPVANGNNQ MDQSASKDLI  240
NINEPPRETT PMDIEVNHQN HHENAPKPQE NNNNNHYDEA EEALKLEQAE EDERPPPACV  300
LNKEAPLPLL QYKRRRQNEP NNNSSRTTQD HCSSTITTVD NTPITLISSS TAAATNTAIS  360
ALLEFSLMGI SAKKENTPQP PNKEAYPPAP LPSTEEKLND LQKEVHQMSV ERETFKLEMM  420
SAEAMISILQ SRIDALRQEN DELRKNNATK GQAVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A8e-472418512170NAC domain-containing protein 19
3swm_B8e-472418512170NAC domain-containing protein 19
3swm_C8e-472418512170NAC domain-containing protein 19
3swm_D8e-472418512170NAC domain-containing protein 19
3swp_A8e-472418512170NAC domain-containing protein 19
3swp_B8e-472418512170NAC domain-containing protein 19
3swp_C8e-472418512170NAC domain-containing protein 19
3swp_D8e-472418512170NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.106090.0microspore-derived embryo| root| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in floral organs, and, at low levels, in other organs. {ECO:0000269|PubMed:25578968}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00612ChIP-seqTransfer from AT3G10490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00000394001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013750306.10.0NAC domain-containing protein 78-like isoform X3
SwissprotQ9SQX90.0NAC50_ARATH; NAC domain containing protein 50
TrEMBLA0A078F5F00.0A0A078F5F0_BRANA; BnaA05g28370D protein
TrEMBLA0A397ZLX10.0A0A397ZLX1_BRACM; Uncharacterized protein
STRINGBo5g137360.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17802880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.10.0NAC domain containing protein 50
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]