PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00000337001
Common NameGSBRNA2T00000337001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 365aa    MW: 41440 Da    PI: 8.3998
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00000337001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3443.9e-14241071496
                          T-EE--HHH.HTT........---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                   B3  14 grlvlpkkfaeeh........ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                          + l +p  f ++h        + +   +  ++l++  s  +Wevk+  ++++    lt+GW+eF  +++L++gD+v+F++dg+  f  +v
  GSBRNA2T00000337001  24 SYLNIPMAFYSKHikgttdegNANAGDKAVVKLRSdASDLTWEVKM--DGRR----LTQGWQEFTTSHDLRVGDIVIFRHDGDLLF--HV 105
                          4589**********9999976333334556777776777*******..9998....***********************8875444..66 PP

                          EE CS
                   B3  95 kv 96 
                          + 
  GSBRNA2T00000337001 106 TT 107
                          55 PP
2B356.26.1e-18149241498
                          E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                          + +++ +l+++ l lp+ f +++g+ ++e  +++l +e  + W+  liy k+ g +++++GW++F+++n+ +++  ++Fkl++  ++++v
  GSBRNA2T00000337001 149 ARVTPTNLRKDSLFLPRGFSRSNGLTNRE-CEIILLNEYEKPWTASLIYYKTTGDVYIRTGWRRFCRENRKRVNGLLTFKLVQ-AGTKPV 236
                          567899999**************998655.6**************************************************98.788899 PP

                          EEEE- CS
                   B3  94 vkvfr 98 
                          +++++
  GSBRNA2T00000337001 237 LQLCS 241
                          99997 PP
3B347.72.8e-15260346189
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          f++ ++++++l+++ l+lp kf+  +g+++++  ++tl d+ g + +  l+ +++ g++ ++k W+eF++ang+k+g++++++l++++e
  GSBRNA2T00000337001 260 FLTLTLTPYSLTKSKLCLPGKFVWLNGIENAR--KITLVDRYGVKRTTSLRPDNNYGAMRMGKEWREFCEANGVKAGESFTLELIKEEE 346
                          677788999**************999988555..8********999999999********************************98744 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.2E-215113IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.4E-197113IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.25111111IPR003340B3 DNA binding domain
CDDcd100177.84E-1412108No hitNo description
SMARTSM010196.3E-1914111IPR003340B3 DNA binding domain
PfamPF023626.6E-925100IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-18140242IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.94E-20142245IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.3E-24146243IPR003340B3 DNA binding domain
CDDcd100171.97E-18146241No hitNo description
PROSITE profilePS5086312.238146242IPR003340B3 DNA binding domain
PfamPF023624.8E-17148241IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-16252345IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-16256345IPR015300DNA-binding pseudobarrel domain
CDDcd100171.16E-13259343No hitNo description
SMARTSM010193.6E-18260364IPR003340B3 DNA binding domain
PROSITE profilePS5086311.533260363IPR003340B3 DNA binding domain
PfamPF023622.3E-13260346IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MANASASSPM NPHFFQPLLP GFQSYLNIPM AFYSKHIKGT TDEGNANAGD KAVVKLRSDA  60
SDLTWEVKMD GRRLTQGWQE FTTSHDLRVG DIVIFRHDGD LLFHVTTFGP SCCEIQYDDV  120
FHKSSDSDLA MNQETRESVS PSDKSCFVAR VTPTNLRKDS LFLPRGFSRS NGLTNRECEI  180
ILLNEYEKPW TASLIYYKTT GDVYIRTGWR RFCRENRKRV NGLLTFKLVQ AGTKPVLQLC  240
SSMHNRDCLR ASSSRSQERF LTLTLTPYSL TKSKLCLPGK FVWLNGIENA RKITLVDRYG  300
VKRTTSLRPD NNYGAMRMGK EWREFCEANG VKAGESFTLE LIKEEEEEEE DTAATHLLKF  360
CTKA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00000337001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009146779.10.0PREDICTED: B3 domain-containing protein REM7-like
TrEMBLA0A078F6940.0A0A078F694_BRANA; BnaA05g27900D protein
TrEMBLA0A397ZLS60.0A0A397ZLS6_BRACM; Uncharacterized protein
STRINGBra029892.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.12e-94B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]