PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00000220001 | ||||||||
Common Name | GSBRNA2T00000220001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 245aa MW: 25371.4 Da PI: 10.1006 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.5 | 8.4e-07 | 35 | 58 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C f+ t C++G++C+F H GSBRNA2T00000220001 35 KSKPCTKFFSTSGCPFGENCHFLH 58 7789******************** PP | |||||||
2 | zf-CCCH | 33.7 | 6.1e-11 | 213 | 238 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+ C +f++ G C +GdrC+FaHg+ GSBRNA2T00000220001 213 FKTKMCERFSK-GSCTFGDRCHFAHGE 238 69*********.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.887 | 33 | 61 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.33 | 33 | 60 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.53E-6 | 34 | 58 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.0E-8 | 35 | 58 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.5E-5 | 35 | 58 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 2.63E-15 | 102 | 183 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 1.4E-15 | 112 | 181 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 9.2E-10 | 112 | 182 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.068 | 113 | 177 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 9.1E-12 | 115 | 179 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 2.18E-13 | 115 | 177 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 5.0E-16 | 207 | 242 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.446 | 212 | 239 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.8E-6 | 212 | 238 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-8 | 212 | 242 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-7 | 213 | 238 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MDARKRGRPE AGSFNSNGGG FKKSKQEMES GLGSKSKPCT KFFSTSGCPF GENCHFLHFV 60 PGGYNPMAQM TNMGSPMSQV SRNMQGSGGG GGGGRFSGRG ESGPGHVSSF GASATAKISV 120 DASLAGAIIG KGGVCSKQIC RQTGAKLSIQ DHERDPNLKN IELEGTFEQI NEASAMVREL 180 IGRLNSASRR PPGGGGGGGG LGSEGKPHPG SNFKTKMCER FSKGSCTFGD RCHFAHGEAE 240 LRRS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.16755 | 0.0 | flower |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00000220001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353531 | 0.0 | AK353531.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-50-B10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009146641.1 | 1e-175 | PREDICTED: zinc finger CCCH domain-containing protein 36 isoform X1 | ||||
Swissprot | Q9C7C3 | 1e-141 | C3H36_ARATH; Zinc finger CCCH domain-containing protein 36 | ||||
TrEMBL | A0A078F9J8 | 1e-174 | A0A078F9J8_BRANA; BnaA05g26890D protein | ||||
TrEMBL | A0A397ZKQ3 | 1e-174 | A0A397ZKQ3_BRACM; Uncharacterized protein | ||||
TrEMBL | M4F131 | 1e-174 | M4F131_BRARP; Uncharacterized protein | ||||
STRING | Bra034776.1-P | 1e-174 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2336 | 28 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 1e-122 | C3H family protein |
Publications ? help Back to Top | |||
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