PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00000163001
Common NameGSBRNA2T00000163001, GSBRNA2T00074364001, LOC106345427
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 295aa    MW: 33226.6 Da    PI: 8.2396
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00000163001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.3e-172471148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg W++eEd +l+++++ +G ++W+++++  g+ R++k+c++rw +yl
  GSBRNA2T00000163001 24 RGLWSPEEDAKLLRYITTHGHPSWSSVPKLAGLQRCGKSCRLRWINYL 71
                         788*******************************************97 PP
2Myb_DNA-binding55.41.4e-1777120146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg++T+eE++ ++d+++ lG++ W+ Ia++++ gRt++++k++w++
  GSBRNA2T00000163001  77 RGSFTAEEEQTIIDVHRILGNK-WAQIAKHLP-GRTDNEVKNFWNS 120
                          89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-251674IPR009057Homeodomain-like
PROSITE profilePS5129417.1281971IPR017930Myb domain
SuperFamilySSF466894.49E-2922118IPR009057Homeodomain-like
SMARTSM007174.6E-122373IPR001005SANT/Myb domain
PfamPF002496.3E-152471IPR001005SANT/Myb domain
CDDcd001672.03E-102771No hitNo description
PROSITE profilePS5129426.60372126IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-2675126IPR009057Homeodomain-like
SMARTSM007176.5E-1676124IPR001005SANT/Myb domain
PfamPF002495.1E-1677120IPR001005SANT/Myb domain
CDDcd001677.58E-1279119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MSEKWEMKRD EMGHRCCGKH KVKRGLWSPE EDAKLLRYIT THGHPSWSSV PKLAGLQRCG  60
KSCRLRWINY LRPDLKRGSF TAEEEQTIID VHRILGNKWA QIAKHLPGRT DNEVKNFWNS  120
CIKKKLLSQG LDPSTHNLMP SHKRSASSSS NNTPKPSKTK SIMTNPTFDQ STTTFSITNV  180
NPYSSNKPNK VKSPNQTTIP SQTVIPIDHT MSSLLNDENM IPNWSNVDGM APIHEEAPMF  240
SSEKAVMGVE DDDLNMDILF NTPSSSTFDP DFGSMFSSAM SMDFNPMDDL GWTF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-30241267108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00000163001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893350.0AC189335.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB039A19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013640078.10.0transcription repressor MYB6
TrEMBLA0A078HWH80.0A0A078HWH8_BRANA; BnaA05g26450D protein
TrEMBLA0A397ZEC20.0A0A397ZEC2_BRACM; Uncharacterized protein
STRINGBra034738.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79552539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.11e-177myb domain protein 67
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]