PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi5g27467.2.p | ||||||||
Common Name | BRADI_5g27467 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 450aa MW: 49590.6 Da PI: 7.5344 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.4 | 2e-51 | 118 | 266 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.................kvkaeekewyfFskrdkkyatgkrknr 76 +ppGfrFhPt+eelv +yL++kv+++k++l ++i+evd+y++ePwdL++ + ++++ ewyfFs +d+ky++g+r+nr Bradi5g27467.2.p 118 VPPGFRFHPTEEELVGYYLARKVASQKIDL-DIIQEVDLYRIEPWDLQErcgrqygagsgheedsfRSSSSSAEWYFFSFKDRKYPSGTRTNR 209 69****************************.99**************95589999999998888665555677******************** PP NAM 77 atksgyWkatgkdkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128 at++g+Wkatg+dk+vl+ +g+++g++ktLvfy+grap+g+kt+W+mheyrl Bradi5g27467.2.p 210 ATAAGFWKATGRDKPVLRGghghgRGAVIGMRKTLVFYRGRAPNGRKTEWIMHEYRL 266 *****************98877777778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-55 | 116 | 287 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.182 | 118 | 287 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-27 | 119 | 266 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MLFGIYKYGP KLSFPSYQTW IDLTIITRLL LNSLISFSLS RPPTTKLQAS TIASSIKYRS 60 SSSSSSSSCL ASRLINLFRQ ELEVNRSRAG QLAFGGQIEL ATSMEHLQQQ QDDQSCCVPP 120 GFRFHPTEEE LVGYYLARKV ASQKIDLDII QEVDLYRIEP WDLQERCGRQ YGAGSGHEED 180 SFRSSSSSAE WYFFSFKDRK YPSGTRTNRA TAAGFWKATG RDKPVLRGGH GHGRGAVIGM 240 RKTLVFYRGR APNGRKTEWI MHEYRLQSSE HAPTPEEGWV VCRAFHKPLP NMHHHRPMPF 300 VFPGADHYAA AAGGPPPAGY YINDIDARLN GHGGDLLNYL HPAPVSGGGG GGFVFPGNGS 360 VHGQMIVSED LQVESKKHVN IFSSIPQLIE SPVTATIDDD DQAGAGQQAA GGIDWNFLDS 420 LLSSTSSASQ LIHDSSSQSQ LMMHLQQQH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-48 | 107 | 287 | 3 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi5g27467.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ693426 | 0.0 | JQ693426.1 Brachypodium distachyon SWN5 (SWN5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010240665.1 | 0.0 | protein SOMBRERO isoform X1 | ||||
TrEMBL | A0A0Q3EGN2 | 0.0 | A0A0Q3EGN2_BRADI; Uncharacterized protein | ||||
STRING | BRADI5G27467.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2594 | 37 | 91 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36160.1 | 9e-74 | NAC domain containing protein 76 |
Link Out ? help Back to Top | |
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Phytozome | Bradi5g27467.2.p |
Entrez Gene | 100838138 |
Publications ? help Back to Top | |||
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