PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi5g27290.1.p | ||||||||
Common Name | BRADI_5g27290, LOC100835063 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 496aa MW: 52022.7 Da PI: 8.949 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 22.9 | 2.2e-07 | 234 | 257 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++CpdCg +F r ++L+rH++t H Bradi5g27290.1.p 234 FSCPDCGDVFVRAESLHRHQSTrH 257 89*******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.783 | 234 | 262 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 236 | 257 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 1.12E-15 | 259 | 306 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 1.2E-10 | 260 | 494 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
SuperFamily | SSF56399 | 1.12E-15 | 333 | 494 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 496 aa Download sequence Send to blast |
MVEPAAKKST TSMSGSSMRK KKPEKERLAA EKQQQNSGSS SSKKQSSSGT AGAEPAASAA 60 ESPSYRLALR SLFSCRNTHA QHHTHRVPPP ADSGAVVAMA SKKCKKQQQQ QQLGCSSGAS 120 ICKLRDAGPR RPVLMKKPEE EPPNLVDAMT TKRRASVSGG GGGSGGERRA VKKALQQRQG 180 EAVAVVVSSS SSSSSAAGGS FRLRRLSGCY ECHHMVVDPM SGGGGGGSMR AAVFSCPDCG 240 DVFVRAESLH RHQSTRHAVS ELGPEDTSRN IIEIIFQSSW LKKQSPVCAV DRILKVHNAP 300 ATLARFEAHR DAVKAKALMI SSSGSGSGGG GGARCTADGN ELLRFHCAAL ACSLGLRGAT 360 HLCDHASCAA CAIVRDGFVV APGAGAGVRT MATSGRAHDA VAVEYEDGGE RRRAMLVCRV 420 IAGRVKRPAQ EKEAAAPESE KKDDLPPEME TKTAEEEEDE YDSVAGSAGV YSSMDELEVF 480 NPTAILPCFV VVYKA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi5g27290.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010227348.1 | 0.0 | uncharacterized protein LOC100835063 | ||||
TrEMBL | I1J3R2 | 0.0 | I1J3R2_BRADI; Uncharacterized protein | ||||
STRING | BRADI5G27290.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2633 | 38 | 80 | Representative plant | OGRP661 | 14 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75710.1 | 5e-79 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi5g27290.1.p |
Entrez Gene | 100835063 |