PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g25700.2.p
Common NameBRADI_5g25700, LOC104581460
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 304aa    MW: 32377.4 Da    PI: 10.0633
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g25700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.34.1e-1880170275
          trihelix   2 WtkqevlaLiearremeerlrrgk.................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 
                       Wt +e+l+Li+a+r +++r   g                  +++++W++v ++++++g+ rs++qC++kw+nl ++ykk+++  ++ +s+s
  Bradi5g25700.2.p  80 WTLHETLVLITAKRLDDDRRAGGGvagssssspagpsalprSAEQRWKWVENYCWSQGCLRSQNQCNDKWDNLLRDYKKVRDFHNRLASNS 170
                       **************777777654344456677778888888*****************************************999875544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.55172153IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.7E-573155IPR009057Homeodomain-like
PfamPF138373.0E-1179164No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MSASPDPSPS SSTPAGHLRT HPYPHHHNLH LSTPPPPQPH PPAAPGPLAV TPPHQQALAP  60
YSAPPPSPAS TPRDYRKGNW TLHETLVLIT AKRLDDDRRA GGGVAGSSSS SPAGPSALPR  120
SAEQRWKWVE NYCWSQGCLR SQNQCNDKWD NLLRDYKKVR DFHNRLASNS TAPSGSGAAP  180
AAAAPLPTSY WAMERHERKE RNLPTNLAAE VYDALCDVLS RRAARRGGAP VAPSPPPPLA  240
LPAPPLHPPP KPLLSQQQQR IPPHHPPLLQ LPPPPVAVAP PPTTTSVSGN GPLSVSNTPY  300
STT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g25700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014751247.10.0trihelix transcription factor ASR3
TrEMBLA0A2K2CJA70.0A0A2K2CJA7_BRADI; Uncharacterized protein
STRINGBRADI5G25700.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.18e-36Trihelix family protein