PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g25340.1.p
Common NameBRADI_5g25340, LOC100832005
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 299aa    MW: 31230 Da    PI: 9.6543
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g25340.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.35.4e-08100125227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       kt+ C  +     C++Gd+C+FaHg+
  Bradi5g25340.1.p 100 KTRMCTKYNTAEGCRFGDKCHFAHGE 125
                       9***********************96 PP
2zf-CCCH39.68.5e-13264289127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       ykt++C +f++ GtC +GdrC+FaHg+
  Bradi5g25340.1.p 264 YKTKICENFLK-GTCTFGDRCHFAHGE 289
                       9**********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.3243462IPR000571Zinc finger, CCCH-type
SMARTSM003563.63461IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-73559IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-53559IPR000571Zinc finger, CCCH-type
PfamPF146081.14259No hitNo description
Gene3DG3DSA:4.10.1000.103.9E-1397128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.75198126IPR000571Zinc finger, CCCH-type
SMARTSM003560.1298125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-899128IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-4100125IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.8E-13161236IPR004088K Homology domain, type 1
SMARTSM003225.0E-10165235IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.107.8E-14165235IPR004088K Homology domain, type 1
PROSITE profilePS5008413.544166230IPR004088K Homology domain, type 1
CDDcd001051.32E-12168230No hitNo description
PfamPF000131.2E-9168230IPR004088K Homology domain, type 1
SuperFamilySSF902291.57E-9262293IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-15262293IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-9263289IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.92263290IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-10264289IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MDGAAAARKR SRTDTANGGA KRSKETESQQ TGLSSKSKPC TKFFSTVGCP FGEGCHFLHF  60
VPGGYQAVSK THNLGHAAAS APSRAPVDHG ANSHPAPAGK TRMCTKYNTA EGCRFGDKCH  120
FAHGERELGR TTYESPYAPP MGGRFGSRHE PHPAMMGPTT GSFGASATAK ISVDAALAGG  180
IIGKSGVNTK QICRVTGVKL SIRDHESDPN LKNIELEGNF DQIKQASDMV GELIATISAS  240
TPLKNPAGAV PPAGRGGPGG RSNYKTKICE NFLKGTCTFG DRCHFAHGEN EQRKGAAV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g25340.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580767.10.0zinc finger CCCH domain-containing protein 31
SwissprotQ7XPK11e-148C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31
TrEMBLI1J3340.0I1J334_BRADI; Uncharacterized protein
STRINGBRADI5G25340.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Representative plantOGRP10261756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.14e-72C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]