PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g25157.1.p
Common NameBRADI_5g25157, LOC100824752
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 956aa    MW: 105663 Da    PI: 6.3765
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g25157.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.84.2e-23144245199
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f+k lt sd++++g +++p++ ae+       ++++++ ++l+++d++ + W++++iyr++++r++lt+GW+ Fv a++Lk+gD+v+F   ++
  Bradi5g25157.1.p 144 FCKNLTASDTSTHGGFSVPRRAAEKLfpqldySMQPPN-QELIVRDLHDNMWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDSVLFI--RD 233
                       89*********************999*****9555555.49************************************************..45 PP

                       SEE..EEEEE-S CS
                B3  88 sefelvvkvfrk 99 
                       ++ +l+++v+r+
  Bradi5g25157.1.p 234 EKSQLLLGVRRA 245
                       677789999997 PP
2Auxin_resp116.52.3e-38270352183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       aahaas++s F+++YnPr+s+s Fvv++++++ka +v+ svGmRf m+fete+ss+rr++Gt+vgvsd+dp+rWpnSkWr+L+
  Bradi5g25157.1.p 270 AAHAASSGSSFTIYYNPRTSPSPFVVPLARYNKANYVQQSVGMRFAMMFETEESSKRRYTGTIVGVSDYDPIRWPNSKWRNLQ 352
                       79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.62E-44135273IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.2E-41136258IPR015300DNA-binding pseudobarrel domain
CDDcd100172.66E-20143244No hitNo description
PROSITE profilePS5086312.689144246IPR003340B3 DNA binding domain
PfamPF023621.1E-20144245IPR003340B3 DNA binding domain
SMARTSM010191.3E-22144246IPR003340B3 DNA binding domain
PfamPF065074.3E-34270352IPR010525Auxin response factor
PfamPF023094.8E-10848938IPR033389AUX/IAA domain
PROSITE profilePS5174525.592851935IPR000270PB1 domain
SuperFamilySSF542778.5E-9869930No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0009942Biological Processlongitudinal axis specification
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0048507Biological Processmeristem development
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0042802Molecular Functionidentical protein binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 956 aa     Download sequence    Send to blast
MASSQEKQPT FGVLRNAAAL LDEMQLLGEA QGAKKVINSE LWHACAGPLV FLPQRGSLVY  60
YFPQGHSEQV AATTRKVPNS RIPNYPNLPS QLLCQVHNIT MHADKETDEV YAQMTLQPVN  120
SETDVFPIPA LGSYAKSKHP PEYFCKNLTA SDTSTHGGFS VPRRAAEKLF PQLDYSMQPP  180
NQELIVRDLH DNMWTFRHIY RGQPKRHLLT TGWSLFVGAK RLKAGDSVLF IRDEKSQLLL  240
GVRRATRQQT QLSSSVLSTD SMHIGVLAAA AHAASSGSSF TIYYNPRTSP SPFVVPLARY  300
NKANYVQQSV GMRFAMMFET EESSKRRYTG TIVGVSDYDP IRWPNSKWRN LQVEWDEHGY  360
GERPERVSIW DIETPENALV FPSSSLNSKR QCLPGYGVPG LEIGSVNMPS LTEIPTVLGN  420
PRALGNPYGN LQHMPAVGSE LAMMLLSQSG QNLGTPLSCH QSSYSSIIQN VKQNYVPPST  480
FGVSTVPIKQ ESMHSNEAQQ QLHAPKLRRG DLENCELQPV TDSVSASELN VAVREPRNTD  540
SYQSQSISEQ NGKGEPKVKT RRSKKGLSRK TISESSELSS TPSRVCADQQ HGFEVKLVAG  600
DTQQINSANN EDSSGALAHG NFARQLQGQQ VEQNGSLSPP KLESSKSPDG GKSVNSFPNQ  660
GCFSQFFDGL DWMIQPSYYQ DSNGIQSVSA SENIFSSSAN IPSTINADTM EAFQNSCLSD  720
CFPNSIQDFI GSPDLNSITF LSPDMQNLDV QHDGSNLPST SNSYVQMSFS EDSGNHMESI  780
QRSMNNTSCS QPQATESFDL GMYSKLPSLK ETQVLSLPEI HNSSRGTSSC SMDVTDYSID  840
RSAKPLKPPV RTYTKVQKLG SVGRSIDVTR YRDYRELRSA IASMFGLQGK LEHPGSSEWK  900
LVYVDYENDV LLVGDDPWEE FINCVRCIRI LSPSEVQQMS ESGMHVLNDC IQTDH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A0.01837531390Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00153DAPTransfer from AT1G19850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g25157.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003579438.10.0auxin response factor 11 isoform X1
SwissprotQ01K260.0ARFK_ORYSI; Auxin response factor 11
SwissprotQ8S9830.0ARFK_ORYSJ; Auxin response factor 11
TrEMBLI1J3100.0I1J310_BRADI; Auxin response factor
STRINGBRADI5G25157.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86733241
Representative plantOGRP82601216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein
Publications ? help Back to Top
  1. Shen C, et al.
    Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.).
    J. Exp. Bot., 2010. 61(14): p. 3971-81
    [PMID:20693412]
  2. Indoliya Y, et al.
    Decoding regulatory landscape of somatic embryogenesis reveals differential regulatory networks between japonica and indica rice subspecies.
    Sci Rep, 2016. 6: p. 23050
    [PMID:26973288]