PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi5g24710.1.p | ||||||||
Common Name | BRADI_5g24710 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 163aa MW: 17638.1 Da PI: 9.3836 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.4 | 3.6e-18 | 8 | 57 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr+++ +g+Wv+eIr+p +r +lg++ t+e Aa+a+++a++ l+g Bradi5g24710.1.p 8 RYKGVRQRH-WGSWVSEIRHP-----AmkTRLWLGTYSTEERAARAYDEAAEMLNG 57 7*******9.**********8.....345***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.549 | 8 | 65 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.61E-29 | 8 | 67 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.5E-30 | 8 | 66 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-12 | 8 | 57 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-19 | 8 | 67 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.8E-32 | 8 | 71 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-9 | 9 | 20 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-9 | 31 | 47 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MPKVPLERYK GVRQRHWGSW VSEIRHPAMK TRLWLGTYST EERAARAYDE AAEMLNGPAA 60 RMNFPASVDV TGSLHAYDRA KVEKYRMLPP SSSTAMTKAA PVLPPSQDGA KAVASSSSSA 120 GAGGGAMIFT DDLKFIEEMI KEMTHDGPIE LVPISSVRSA TQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-14 | 9 | 69 | 6 | 67 | ATERF1 |
3gcc_A | 4e-14 | 9 | 69 | 6 | 67 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi5g24710.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003579417.1 | 3e-50 | ethylene-responsive transcription factor ERF003 | ||||
TrEMBL | I1J2V3 | 1e-115 | I1J2V3_BRADI; Uncharacterized protein | ||||
STRING | BRADI5G24710.1 | 1e-116 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1418 | 35 | 118 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25190.1 | 5e-22 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi5g24710.1.p |