PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g24700.1.p
Common NameBRADI_5g24700, LOC104581452
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 143aa    MW: 15306.1 Da    PI: 6.7852
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g24700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.23.2e-16655255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       ykGVr+++ +g+Wv+eI++p+    ++r++lg++ tae Aa+ +++a++ l g
  Bradi5g24700.1.p  6 PYKGVRQRR-WGSWVSEICHPVL---KTRIWLGSHKTAEAAARVYDEAARLLSG 55
                      59****998.**********744...5**********************97766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381234.1E-202140IPR017392AP2/ERF transcription factor ERF/PTI6
SMARTSM003802.1E-28669IPR001471AP2/ERF domain
PROSITE profilePS5103218.676663IPR001471AP2/ERF domain
CDDcd000184.69E-26763No hitNo description
SuperFamilySSF541713.07E-17764IPR016177DNA-binding domain
PfamPF008471.0E-8751IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-27764IPR001471AP2/ERF domain
PRINTSPR003673.4E-8718IPR001471AP2/ERF domain
PRINTSPR003673.4E-82945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MPKTHPYKGV RQRRWGSWVS EICHPVLKTR IWLGSHKTAE AAARVYDEAA RLLSGPAART  60
NFPGSYTTGN LTKEVRAKLE ECPVPPSSSS TTAAAPAPAS SSPTGGAMED DDVEFVEAMI  120
REMTDYGPVE IDPSASVRST TN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-116691478Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g24700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227322.11e-101ethylene-responsive transcription factor ERF003
TrEMBLI1J2V21e-100I1J2V2_BRADI; Uncharacterized protein
STRINGBRADI5G24700.11e-100(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141835118
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.11e-19ERF family protein