PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi5g24670.1.p | ||||||||
Common Name | BRADI_5g24670, LOC100841788 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | SBP | ||||||||
Protein Properties | Length: 421aa MW: 45811.3 Da PI: 7.8376 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128.6 | 2.4e-40 | 185 | 263 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adls ak+yhrrhkvCe+hskapvv+ + gl+qrfCqqCsrfh l+efD++k+sCr+rLa+hn+rrrk+++ Bradi5g24670.1.p 185 RCQAEGCKADLSGAKRYHRRHKVCEHHSKAPVVVtAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSKP 263 6******************************98725689*************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 9.8E-34 | 180 | 248 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 30.222 | 183 | 261 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.62E-37 | 184 | 264 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 7.5E-31 | 186 | 260 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 421 aa Download sequence Send to blast |
MMNLPASASS CDDFIGVYGA PSNNPSPNNP PPQQPASSLF PLMDHQEQHR DHHHLGYNLE 60 PNSLALLPPS NAHHHHGATI AAHSAHDILQ FYPTGATHHH YLAAAAAGNN PYSGHFSGAG 120 STFQSSYYGQ QQQGPEYSYF PALVSSAEEN MASFAATQLG LNLGYRTYFP PRGHGGYAYG 180 HHPPRCQAEG CKADLSGAKR YHRRHKVCEH HSKAPVVVTA GGLHQRFCQQ CSRFHLLDEF 240 DDAKKSCRKR LADHNRRRRK SKPSDADAAD KKRSTQASKT ASTKGKAAGS SSKSTGTGDG 300 MDIQVVGVAD LSKDQDETMG LGEVVKEMQV DPKGKASMQQ QQGHHGLHQQ QQSHHGFHFP 360 SSSAGSCFPH QSQAVSSSDN TSNIAQVQEP SLGFHQQHHH QQHNNILQLG QAMFDLDFDH 420 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-26 | 186 | 260 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 255 | 272 | RRRRKSKPSDADAADKKR |
2 | 256 | 261 | RRRKSK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that plays an important role in building the laminar joint between leaf blade and leaf sheath boundary, thereby controlling ligule and auricle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi5g24670.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010240547.1 | 0.0 | squamosa promoter-binding-like protein 8 | ||||
Swissprot | Q01KM7 | 1e-170 | SPL8_ORYSI; Squamosa promoter-binding-like protein 8 | ||||
TrEMBL | I1J2U9 | 0.0 | I1J2U9_BRADI; Uncharacterized protein | ||||
STRING | BRADI5G24670.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6990 | 34 | 52 | Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.1 | 8e-39 | squamosa promoter binding protein-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Bradi5g24670.1.p |
Entrez Gene | 100841788 |