PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi5g24110.1.p | ||||||||
Common Name | LOC100835071 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 250aa MW: 26883.1 Da PI: 10.0669 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.7 | 1.1e-16 | 75 | 124 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr +k +g+WvAeIr+p + r+r++lg++ t+ Aa+a++ a +l+g Bradi5g24110.1.p 75 QYRGVRMRK-WGKWVAEIREPHK---RTRIWLGSYATPVAAARAYDTAVFYLRG 124 69*****99.**********732...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.5E-30 | 74 | 133 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.589 | 75 | 132 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.8E-10 | 75 | 124 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-21 | 75 | 134 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.1E-35 | 75 | 138 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.04E-25 | 75 | 133 | No hit | No description |
PRINTS | PR00367 | 6.6E-12 | 76 | 87 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.6E-12 | 114 | 134 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MQGEYRSSSE DSAGSAASAA AAAAAAMAPL AAAAAAVSAK EEQVTVAVAP PPLLPLHHHH 60 HHQQQQQQMQ GQKRQYRGVR MRKWGKWVAE IREPHKRTRI WLGSYATPVA AARAYDTAVF 120 YLRGRSARLN FPDEISGLAP LSSSSPAPSD EADGALSAAS IRKKAIEVGS RVDALQTGMM 180 PVPAASVPQP TPPAAAHHRE RPLKPRTHSQ EEELLEQQQQ QKLQRTAWNG RAKNPDLNQA 240 PSPESSDAE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-14 | 75 | 136 | 14 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi5g24110.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK061095 | 1e-81 | AK061095.1 Oryza sativa Japonica Group cDNA clone:006-207-A04, full insert sequence. | |||
GenBank | AK099333 | 1e-81 | AK099333.1 Oryza sativa Japonica Group cDNA clone:J033003O11, full insert sequence. | |||
GenBank | AL606635 | 1e-81 | AL606635.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010D21, complete sequence. | |||
GenBank | AL732335 | 1e-81 | AL732335.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0721B11, complete sequence. | |||
GenBank | AP014960 | 1e-81 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 1e-81 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003580694.1 | 1e-179 | ethylene-responsive transcription factor RAP2-1 | ||||
TrEMBL | I1J2M8 | 1e-177 | I1J2M8_BRADI; Uncharacterized protein | ||||
STRING | BRADI5G24110.1 | 1e-178 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3943 | 30 | 75 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23340.1 | 2e-40 | DREB and EAR motif protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Bradi5g24110.1.p |
Entrez Gene | 100835071 |