PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi5g24100.3.p | ||||||||
Common Name | BRADI_5g24100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | AP2 | ||||||||
Protein Properties | Length: 403aa MW: 42939.8 Da PI: 7.2695 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 23.5 | 1.4e-07 | 61 | 94 | 17 | 55 |
AP2 17 AeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++rd + k+++lg f+ta Aa+a+++a+ k++g Bradi5g24100.3.p 61 VQCRD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 94 79999......55************************997 PP | |||||||
2 | AP2 | 43.4 | 8.3e-14 | 136 | 186 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+eeAa+ +++a+ k +g Bradi5g24100.3.p 136 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAARSYDRAAIKCNG 186 89********.7******5553..2.26**********************99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 4.9E-13 | 57 | 108 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 11.034 | 58 | 102 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.97E-9 | 66 | 103 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-11 | 67 | 102 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-17 | 136 | 196 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.5E-10 | 136 | 186 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.73E-26 | 136 | 196 | No hit | No description |
PROSITE profile | PS51032 | 16.186 | 137 | 194 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-32 | 137 | 200 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-16 | 137 | 194 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MGLVLDSSCF GHSSLLLLLP FIATSYQSYS PSLSSPFVSP SLSSHSLLPS LLLSLSPHPF 60 VQCRDCGKQV YLGGFDTAHA AARAYDRAAI KFRGVEADIN FSLDDYDDIK QMGNLTKEEF 120 VHVLRRQSTG FPRGSSKYRG VTLHKCGRWE ARMGQFLGKK YVYLGLFDTE EEAARSYDRA 180 AIKCNGKDAV TNFDPSIYAE EFEPTAATDD GEQNLDLSLG SSAGSKRGIL DGGDDDSAAG 240 SDQRVPMAFE LDWQAAARST KAKLDQNLKH QQMPPPGLQA SHLPFSPRHH QFVSNGGDPG 300 TAGGLSLTVG GTSGGAGHWH PHLQQQQQQR LHGVWGNNGV GGGAGTSWPP PPSPVPHPAA 360 PPSNAAAAAA AAAASSRFPP YIASQAQSWL QKNGFHSLAR PT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (PubMed:22408071). Involved in spikelet transition and development (PubMed:22408071). Prevents lemma and palea elongation as well as grain growth (PubMed:22408071). Required for seed shattering through specifying abscission zone (AZ) development (PubMed:22408071). {ECO:0000269|PubMed:22408071}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi5g24100.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK360149 | 0.0 | AK360149.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1111J04. | |||
GenBank | AK371953 | 0.0 | AK371953.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2143N17. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003580693.1 | 0.0 | AP2-like ethylene-responsive transcription factor TOE3 | ||||
Swissprot | B8AVJ9 | 1e-148 | APL25_ORYSI; APETALA2-like protein 5 | ||||
TrEMBL | A0A0Q3GVD3 | 0.0 | A0A0Q3GVD3_BRADI; Uncharacterized protein | ||||
STRING | BRADI5G24100.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 7e-84 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi5g24100.3.p |
Publications ? help Back to Top | |||
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