PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g24100.1.p
Common NameBRADI_5g24100, LOC100834763
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 467aa    MW: 49183.3 Da    PI: 7.2323
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g24100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.55.8e-17109158155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Bradi5g24100.1.p 109 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 158
                       78*******************......55************************997 PP
2AP243.11e-13200250155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV+ +k  grW+A+   +     +k+++lg f+t+eeAa+ +++a+ k +g
  Bradi5g24100.1.p 200 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAARSYDRAAIKCNG 250
                       89********.7******5553..2.26**********************99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-15109167IPR016177DNA-binding domain
PfamPF008475.3E-9109158IPR001471AP2/ERF domain
PROSITE profilePS5103217.701110166IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-17110166IPR001471AP2/ERF domain
SMARTSM003808.4E-32110172IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-17200260IPR016177DNA-binding domain
PfamPF008478.0E-10200250IPR001471AP2/ERF domain
CDDcd000181.18E-24200260No hitNo description
Gene3DG3DSA:3.30.730.102.8E-16201258IPR001471AP2/ERF domain
SMARTSM003801.2E-32201264IPR001471AP2/ERF domain
PROSITE profilePS5103216.186201258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MWDLNDSPAA EAAPPPSPPS VDDSGASSSS AAALVEIPDD DDSAVLTRQF FPPAVVPGEP  60
APGVADAARA GWLRLAGAPP PATASSGGGA AAAAAVGKKS RRGPRSRSSQ YRGVTFYRRT  120
GRWESHIWDC GKQVYLGGFD TAHAAARAYD RAAIKFRGVE ADINFSLDDY DDIKQMGNLT  180
KEEFVHVLRR QSTGFPRGSS KYRGVTLHKC GRWEARMGQF LGKKYVYLGL FDTEEEAARS  240
YDRAAIKCNG KDAVTNFDPS IYAEEFEPTA ATDDGEQNLD LSLGSSAGSK RGILDGGDDD  300
SAAGSDQRVP MAFELDWQAA ARSTKAKLDQ NLKHQQMPPP GLQASHLPFS PRHHQFVSNG  360
GDPGTAGGLS LTVGGTSGGA GHWHPHLQQQ QQQRLHGVWG NNGVGGGAGT SWPPPPSPVP  420
HPAAPPSNAA AAAAAAAASS RFPPYIASQA QSWLQKNGFH SLARPT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor (PubMed:22408071). Involved in spikelet transition and development (PubMed:22408071). Prevents lemma and palea elongation as well as grain growth (PubMed:22408071). Required for seed shattering through specifying abscission zone (AZ) development (PubMed:22408071). {ECO:0000269|PubMed:22408071}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g24100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3601490.0AK360149.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1111J04.
GenBankAK3719530.0AK371953.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2143N17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580693.10.0AP2-like ethylene-responsive transcription factor TOE3
SwissprotB8AVJ90.0APL25_ORYSI; APETALA2-like protein 5
TrEMBLI1J2M70.0I1J2M7_BRADI; Uncharacterized protein
STRINGBRADI5G24100.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55143658
Representative plantOGRP4971784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-99AP2 family protein
Publications ? help Back to Top
  1. Zhou Y, et al.
    Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1.
    Plant Cell, 2012. 24(3): p. 1034-48
    [PMID:22408071]