PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi5g23656.1.p | ||||||||
Common Name | BRADI_5g23656, LOC104581443 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | GATA | ||||||||
Protein Properties | Length: 273aa MW: 30167.8 Da PI: 8.7787 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.2 | 1.1e-18 | 197 | 231 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+C++t+Tp+WR+gp g +tLCnaCGl+y+ ++ Bradi5g23656.1.p 197 CSHCKSTDTPQWREGPLGRRTLCNACGLRYKMGRE 231 *******************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.50.10 | 1.1E-15 | 191 | 229 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 2.23E-14 | 191 | 239 | No hit | No description |
SMART | SM00401 | 1.0E-17 | 191 | 243 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 13.349 | 191 | 228 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 6.82E-14 | 196 | 254 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 197 | 222 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.5E-16 | 197 | 231 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MRRPNNNVFL SLHDVDDVAS LHCDRSSSCR HGESALCCPD DSLDEVLNCI PPLEDELLEA 60 LGIDCSSPVL HGNPNNSAVD ARTVVDVPPK SEHSLSVQEQ LVSPFHHWTI PKKPRGRAGT 120 VRKRPWPHPV IVGATGYQFR HGSNGGPRQP TEPRPVIAAA TGANQFAQGS NGGRRQPVNP 180 RRGRRPGNED ENEPRACSHC KSTDTPQWRE GPLGRRTLCN ACGLRYKMGR EKLVPEYCPS 240 TSPFFRDGKH SNRHSKVEKL RKKEERASME SS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi5g23656.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010227308.1 | 0.0 | GATA transcription factor 12 | ||||
TrEMBL | A0A0Q3EAU1 | 0.0 | A0A0Q3EAU1_BRADI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12777 | 24 | 34 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60530.1 | 7e-24 | GATA transcription factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Bradi5g23656.1.p |
Entrez Gene | 104581443 |