PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi5g23300.1.p

Common Name

BRADI_5g23300, LOC104585443

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Nin-like

Protein Properties

Length: 954aa MW: 103608 Da PI: 6.1964

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi5g23300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.4	1.4e-28	569	620	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl++l+kyFs+++kdAAk+Lgvc+T+LKriCR +GI+RWP+Rki+++ Bradi5g23300.1.p 569 AEKNISLDVLRKYFSGSLKDAAKSLGVCPTTLKRICRAHGISRWPSRKINKV 620 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55781	3.77E-5	210	289	IPR029016	GAF domain-like
PROSITE profile	PS51519	16.893	559	640	IPR003035	RWP-RK domain
Pfam	PF02042	8.0E-26	572	620	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	2.5E-22	850	932	No hit	No description
SuperFamily	SSF54277	4.25E-23	850	936	No hit	No description
PROSITE profile	PS51745	24.31	853	935	IPR000270	PB1 domain
SMART	SM00666	4.5E-21	853	935	IPR000270	PB1 domain
Pfam	PF00564	3.6E-18	854	934	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 954 aa Download sequence Send to blast
MDVPAPSSRA GCNRNMGSPV TEPSDDPYGV PATMNFDGYL ELCSPSLADQ LYSLVNDPSA 60 HQMFAMWSSL GSSPRASGMS EDMPLGAYAG VSEAVAAAPP QKNDLVASEN PAETGRVARS 120 SGEPGADSDP GQGRTSLVPR PVGGNFLADR MLMALSFFRE SLGDGVLAQV WMPVEQEGHA 180 VLSTSDQPFL LDQSLAGYRE VSRNFVFSAK EETGLHPGLP GRVFISGVPE WTSNVLYYSK 240 PEYLRMEYAL HHEVRGSLAM PIYDPSKGSC CAVLELITKR EKPDFNAEMD NVRQALQAVN 300 LKTTKDCSNQ KFYTENQKAA FTEILDVLRA ICHAHMLPLA LTWVPMSNGI DGAYVVGRDG 360 GLGSQSGKEI LCVHESACYV NDAKMKGFFH ACAESPLEKG QGIAGRALKS NLPFFSPNIR 420 EYNIKDYPLA HHARKFGLHA AVAIRLRSTY TGNDDYILEF FLPINCKGSE EQQMLLNNLS 480 STMQRICKSL RTVAESEVDK VDARNAVLYK TTSESVSPTG HSESSSHCDK PITEASFQDL 540 SLVDKQGYME PEQVQSSSMR LAEKKRSTAE KNISLDVLRK YFSGSLKDAA KSLGVCPTTL 600 KRICRAHGIS RWPSRKINKV NRSLKKIQTV INSVHGVDSS LQYDPGTGSL VPAASLPEKR 660 PASSTDALPA LSSGKTVEQK SVPKSEQAYS SPDGWQSESY QVQLSDAEKG EGGEFHMQTS 720 NHSDIGNHTS YGANVTPHVS PEGTQGQSYP VGTVSAFHPK ETGCVSPFVS ARPTAENTGD 780 QIVGRNSPSL QQADIDMVDD AFQKTNMVDD HEAREHTHPS TSGMTDSSSG SASSHPTFKK 840 EPGHALKGKS GPTLTVKATY NGDTVRFKFL PSQGWYQLLE EIAKRFKLST GTFQLKYKDD 900 EDEWVILAND SDLQECVEVM DSMGSCNVKL QVRDLPCLIS SSSGSSTCLR LPT*

Sequence ? help Back to Top

Protein Sequence Length: 954 aa Download sequence Send to blast

MDVPAPSSRA GCNRNMGSPV TEPSDDPYGV PATMNFDGYL ELCSPSLADQ LYSLVNDPSA  60
HQMFAMWSSL GSSPRASGMS EDMPLGAYAG VSEAVAAAPP QKNDLVASEN PAETGRVARS  120
SGEPGADSDP GQGRTSLVPR PVGGNFLADR MLMALSFFRE SLGDGVLAQV WMPVEQEGHA  180
VLSTSDQPFL LDQSLAGYRE VSRNFVFSAK EETGLHPGLP GRVFISGVPE WTSNVLYYSK  240
PEYLRMEYAL HHEVRGSLAM PIYDPSKGSC CAVLELITKR EKPDFNAEMD NVRQALQAVN  300
LKTTKDCSNQ KFYTENQKAA FTEILDVLRA ICHAHMLPLA LTWVPMSNGI DGAYVVGRDG  360
GLGSQSGKEI LCVHESACYV NDAKMKGFFH ACAESPLEKG QGIAGRALKS NLPFFSPNIR  420
EYNIKDYPLA HHARKFGLHA AVAIRLRSTY TGNDDYILEF FLPINCKGSE EQQMLLNNLS  480
STMQRICKSL RTVAESEVDK VDARNAVLYK TTSESVSPTG HSESSSHCDK PITEASFQDL  540
SLVDKQGYME PEQVQSSSMR LAEKKRSTAE KNISLDVLRK YFSGSLKDAA KSLGVCPTTL  600
KRICRAHGIS RWPSRKINKV NRSLKKIQTV INSVHGVDSS LQYDPGTGSL VPAASLPEKR  660
PASSTDALPA LSSGKTVEQK SVPKSEQAYS SPDGWQSESY QVQLSDAEKG EGGEFHMQTS  720
NHSDIGNHTS YGANVTPHVS PEGTQGQSYP VGTVSAFHPK ETGCVSPFVS ARPTAENTGD  780
QIVGRNSPSL QQADIDMVDD AFQKTNMVDD HEAREHTHPS TSGMTDSSSG SASSHPTFKK  840
EPGHALKGKS GPTLTVKATY NGDTVRFKFL PSQGWYQLLE EIAKRFKLST GTFQLKYKDD  900
EDEWVILAND SDLQECVEVM DSMGSCNVKL QVRDLPCLIS SSSGSSTCLR LPT*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi5g23300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010240492.1	0.0	protein NLP2
Swissprot	Q0JC27	0.0	NLP2_ORYSJ; Protein NLP2
TrEMBL	I1J2C5	0.0	I1J2C5_BRADI; Uncharacterized protein
STRING	BRADI5G23300.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3670	35	73
Representative plant	OGRP299	16	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Bradi5g23300.1.p
Entrez Gene	104585443

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]