PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi5g22570.2.p | ||||||||
Common Name | BRADI_5g22570, LOC100829867 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 788aa MW: 85219 Da PI: 6.5115 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.9 | 8.5e-19 | 116 | 168 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++t++q++e+e++++++++p+ ++r+eL+++lgL+ qVk+WFqN+R++ k Bradi5g22570.2.p 116 YHRHTQHQIQEMEAFYKECQHPDDKQRKELSRELGLEPLQVKFWFQNKRTQTK 168 6789**********************************************998 PP | |||||||
2 | START | 180.6 | 9.1e-57 | 296 | 519 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS.............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT- CS START 1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv............dsgealrasgvvdmvlallveellddkeqWdetl 76 ela +a++el+++ ++ep+W e +n++e+ + f ++ +ea+r+s+vv+ ++a+lve+l+d++ q+ + Bradi5g22570.2.p 296 ELAVAAMEELLRMTRLNEPLWAGPGvagpmETLNEEEYARMF--GGPrggglgpkqygqLVSEASRESAVVILTPANLVEILMDVN-QYAAVF 385 57899****************9876779999***********..4445689***********************************.666666 PP S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEEC CS START 77 a....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepks 158 +a+tlev+s+g galq+m+ e+q++splvp R+++fvRy++q ++g+w++vdvS+d q ++++++pSg+li++ + Bradi5g22570.2.p 386 SsivsRAATLEVLSTGvagcydGALQVMSVEFQVPSPLVPtRESYFVRYCKQNSDGTWAVVDVSLDTLQG-------IKCRRRPSGCLIQEAP 471 55555*************************************************************9987.......78************** PP TCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 159 nghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ng+skvtwvehv++++r++h++++ lv+sgla+ga++wv +l+rqce+ Bradi5g22570.2.p 472 NGYSKVTWVEHVEVDDRSVHNIYKLLVNSGLAFGARRWVGALGRQCER 519 **********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-20 | 99 | 168 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.68E-18 | 103 | 171 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.10E-17 | 108 | 171 | No hit | No description |
PROSITE profile | PS50071 | 15.726 | 110 | 170 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.2E-16 | 111 | 174 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.0E-16 | 116 | 168 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 145 | 168 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 35.654 | 287 | 522 | IPR002913 | START domain |
CDD | cd08875 | 6.33E-107 | 291 | 518 | No hit | No description |
SuperFamily | SSF55961 | 4.56E-32 | 294 | 521 | No hit | No description |
SMART | SM00234 | 1.1E-46 | 296 | 519 | IPR002913 | START domain |
Pfam | PF01852 | 3.8E-47 | 297 | 519 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 2.3E-5 | 361 | 512 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 2.15E-23 | 540 | 777 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 788 aa Download sequence Send to blast |
MMIPVRHMPS SMIGRSSAAY GSSSSALSLG QPNLLDSNHQ QLHHHQALLN HQIPAPAMAE 60 SSDNSGRRSM VRRRSEPLGE DFESRSGSEN VDGDGVEDEL QQQADPNKRP RKQNRYHRHT 120 QHQIQEMEAF YKECQHPDDK QRKELSRELG LEPLQVKFWF QNKRTQTKNQ QERHENSQLR 180 GENDKLRAEN MRYKEALSSA SCPSCGGPAA LGEMSFDEHH LRLENARLRD EIDRISAIAA 240 KYVGKPAVPF PVLSNPLAAV GAYGHHHLGA DMFGELQQPM RPTGGAGDQN KGVVVELAVA 300 AMEELLRMTR LNEPLWAGPG VAGPMETLNE EEYARMFGGP RGGGLGPKQY GQLVSEASRE 360 SAVVILTPAN LVEILMDVNQ YAAVFSSIVS RAATLEVLST GVAGCYDGAL QVMSVEFQVP 420 SPLVPTRESY FVRYCKQNSD GTWAVVDVSL DTLQGIKCRR RPSGCLIQEA PNGYSKVTWV 480 EHVEVDDRSV HNIYKLLVNS GLAFGARRWV GALGRQCERL ASVMASNIPN SDIGVITSSE 540 GKKSMLKLAE RMVASFCGGV TASVAHQWTR LSGSGAEDVR VMTRQSVDDP GRPPGIVLNA 600 ATSFWLPVPP KRVFDFLRDE TSRSQWDILS NGGVVQEMAH IANGRDHGNC VSLLRVNSTN 660 SNQSNMLILQ ESCTDASGSY VIYAPVDIVA MNVVLNGGDP DYVALLPSGF AILPDGPAGN 720 IHTGGGPSVS DGGVGSGGSL LTVAFQILVD SVPTAKLSLG SVATVNSLIA CTVERIKAAV 780 SGESSPQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi5g22570.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003580598.1 | 0.0 | homeobox-leucine zipper protein ROC2 | ||||
Swissprot | Q0J9X2 | 0.0 | ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2 | ||||
TrEMBL | I1J240 | 0.0 | I1J240_BRADI; Uncharacterized protein | ||||
STRING | BRADI5G22570.2 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04890.1 | 0.0 | protodermal factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Bradi5g22570.2.p |
Entrez Gene | 100829867 |
Publications ? help Back to Top | |||
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