PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g21820.2.p
Common NameBRADI_5g21820
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 783aa    MW: 88973.3 Da    PI: 6.5525
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g21820.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR176.36.2e-241194190
              FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                      ++Y +YA +vGFsvrk    k+ ++    +r +vCs+eg+r++++ k     r+r+etr+gC a+l +k+ ++gk++vtk++++HnH+la
  Bradi5g21820.2.p 11 EYYVSYAGNVGFSVRKGLWDKTVKS-ASRSRAYVCSREGFRSKNDAK-----RPRPETRMGCPAQLAIKLASNGKYRVTKFVQDHNHQLA 94
                      69***************99999555.589**************9887.....************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.4E-211194IPR004330FAR1 DNA binding domain
PfamPF105516.9E-25191285IPR018289MULE transposase domain
PROSITE profilePS5096610.039458505IPR007527Zinc finger, SWIM-type
PfamPF044344.1E-5460500IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-4480507IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 783 aa     Download sequence    Send to blast
MVFESEEKAY EYYVSYAGNV GFSVRKGLWD KTVKSASRSR AYVCSREGFR SKNDAKRPRP  60
ETRMGCPAQL AIKLASNGKY RVTKFVQDHN HQLAGPFDIG MLKSQRVLSK FQAGNRIANN  120
IPPGYKNYLR TKSTKDMNSG DLGDLMEYFR SMKSDNPSFY YAIQVDANDK AANFFWADAR  180
SILDYHYFSD VICFDMTYKM NNSSRPLSLF LGMNHHRQMV IFGAAFLYDE TAESFKWLLE  240
TFKSAMCGKQ PKTILTGRST TLKEALSLTW PGTIHRSCVW QIYQNAIRCL GHLFSTSEEF  300
AHDFSHCIFD VEDGQEFVDT WDAIIEKYNL KENEWLNELY EDRENWALPY GRQIFSGDIK  360
SMLQAETFGV MVKEYLDCKK ELSYLLKFLG SSVEKRRQEE IQADYKASQG TPGTPQPLLW  420
QAANMYTPIN FELFMREYEL CMDCMVYGCG EFGSLSEYMV TVKNKTREQL VQFDSSDGTI  480
ACTCKKFETT GILCCHILKV HELRNVKEIP AQYFLKRWSK DAKMGTVDEI SGFNFDTDTG  540
SSVPERYAAL CRLFYRIAAK AAENVEVFAL VASQSDQLVE GVERILQSTL ADQSSVVHSI  600
KDQLTRMVQN DYLLGSSNEV QKSIGKKKGQ VARGNGLETN KRQRARKGHP DEAVAGPRDG  660
ELNVTPESMQ TETRNVTDQF LPDQLMQEHY ALGHNFGVST SQNLHDSLNQ FGQASAVSTM  720
QRQPFPGNGQ VTQDYPGDMH ALQFVETNPQ IDSENGDQDQ SSIPVWDFLR CASSHDLHTS  780
PR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15559KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g21820.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010240422.10.0protein FAR1-RELATED SEQUENCE 7
TrEMBLA0A2K2CII90.0A0A2K2CII9_BRADI; Uncharacterized protein
STRINGBRADI5G21820.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-106FAR1-related sequence 5