PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g21700.3.p
Common NameBRADI_5g21700, LOC100832929
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MIKC_MADS
Protein Properties Length: 240aa    MW: 27745 Da    PI: 7.0594
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g21700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.74.7e-26959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      k+ien++ rqvtfskRr g+lKKA+EL +LCda++ v+ifs +gk+yeyss
  Bradi5g21700.3.p  9 KKIENTTSRQVTFSKRRMGLLKKANELAILCDAQIGVVIFSGSGKMYEYSS 59
                      68***********************************************96 PP
2K-box55.82e-19851621491
             K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                       +++  +e++++k+e + L+   R+++GedL+sL+l++  +Leqq++ sl kiR +K++ll +q+ e+++ e  + e++
  Bradi5g21700.3.p  85 QQRIIHEMTRMKDESNRLKIIMRQYMGEDLGSLTLQDVLNLEQQIDFSLYKIRLRKQQLLDQQLLEMRHGEMHIPEDQ 162
                       577889***************************************************************998877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.034161IPR002100Transcription factor, MADS-box
SMARTSM004323.0E-38160IPR002100Transcription factor, MADS-box
CDDcd002651.13E-37276No hitNo description
SuperFamilySSF554552.49E-29279IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.2E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-273859IPR002100Transcription factor, MADS-box
PfamPF014869.2E-1782162IPR002487Transcription factor, K-box
PROSITE profilePS5129712.17285179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MGRGKVELKK IENTTSRQVT FSKRRMGLLK KANELAILCD AQIGVVIFSG SGKMYEYSSP  60
PWRITTIFDR YLKAPSTRFD EMDIQQRIIH EMTRMKDESN RLKIIMRQYM GEDLGSLTLQ  120
DVLNLEQQID FSLYKIRLRK QQLLDQQLLE MRHGEMHIPE DQSSYLCHMD PASGQQSQAA  180
EMIDPKLFPL WDVGSQLYSQ DAESSMTALK LSPQLQEYKL QPLQPNLQEA DLHGYVLRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-16160160MEF2 CHIMERA
6byy_B4e-16160160MEF2 CHIMERA
6byy_C4e-16160160MEF2 CHIMERA
6byy_D4e-16160160MEF2 CHIMERA
6bz1_A4e-16160160MEF2 CHIMERA
6bz1_B4e-16160160MEF2 CHIMERA
6bz1_C4e-16160160MEF2 CHIMERA
6bz1_D4e-16160160MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g21700.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693320.0KF469332.1 Brachypodium distachyon MADS-box transcription factor 38 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001289806.11e-177MADS-box transcription factor 31-like
RefseqXP_024311174.11e-177MADS-box transcription factor 31-like isoform X1
SwissprotQ84NC21e-88MAD31_ORYSJ; MADS-box transcription factor 31
TrEMBLA0A0Q3GU391e-176A0A0Q3GU39_BRADI; Uncharacterized protein
STRINGBRADI5G21700.11e-177(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.12e-41MIKC_MADS family protein
Publications ? help Back to Top
  1. Wei B, et al.
    Genome-wide analysis of the MADS-box gene family in Brachypodium distachyon.
    PLoS ONE, 2014. 9(1): p. e84781
    [PMID:24454749]
  2. Schilling S, et al.
    Non-canonical structure, function and phylogeny of the Bsister MADS-box gene OsMADS30 of rice (Oryza sativa).
    Plant J., 2015. 84(6): p. 1059-72
    [PMID:26473514]