PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g20607.1.p
Common NameBRADI_5g20607, LOC100833962
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRF
Protein Properties Length: 394aa    MW: 43190.2 Da    PI: 8.4346
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g20607.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.52.7e-24126170145
               WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                       d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+
  Bradi5g20607.1.p 126 DPEPGRCRRTDGKKWRCSKEAAQDSKYCERHMHRGRNRSRKPVET 170
                       79****************************************997 PP
2QLQ591.4e-206398237
               QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                       FTaaQ ++L++Q+l+yKyL+a++PvPp+Ll++i++
  Bradi5g20607.1.p 63 TFTAAQYEELEQQALIYKYLVAGVPVPPDLLLPIRR 98
                      6*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.9E-116298IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.2916398IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.0E-146497IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.064126170IPR014977WRC domain
PfamPF088791.1E-20127169IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MAMPFASLSP ATDHRPSPSI FPFCRSSPLY PVAGEEAPPP PPPSGQQQQQ HTMSARWAPR  60
PATFTAAQYE ELEQQALIYK YLVAGVPVPP DLLLPIRRGF DSLASRFYLH HAALGYGSSY  120
FGKKLDPEPG RCRRTDGKKW RCSKEAAQDS KYCERHMHRG RNRSRKPVET QLVAPLSQSQ  180
QQQQTPSAAA PARATAFQSH SLYPAIANGG GGAPGSFTLG STQLHMDNAA PYATAGGGGN  240
KDFRYSTYGV RSLAMDEQSQ FMTGAMDTSM DNYSWRLLPS QTSAFSLSSY PLIGTLSGLD  300
QNTICSLPKA EREPFSFFGG DFVTTVDENV KQENQTLRPF FDEWPKARDS WPELPDDTNT  360
TSFPATKLSI SIPMTTSDFS TTSSRSPNGI YSR*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g20607.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2509471e-175AK250947.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf96d10, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580449.10.0growth-regulating factor 3
SwissprotQ6AWY60.0GRF3_ORYSJ; Growth-regulating factor 3
TrEMBLI1J1E50.0I1J1E5_BRADI; Uncharacterized protein
STRINGBRADI5G20607.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24633476
Representative plantOGRP4601684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.15e-44growth-regulating factor 5