PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi5g20520.3.p

Common Name

BRADI_5g20520, LOC100839058

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

G2-like

Protein Properties

Length: 159aa MW: 17454.1 Da PI: 10.7101

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi5g20520.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.6	1.4e-33	23	77	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWtpeLH+rFv+av++LGG++kAtPk++l+lm++kgLtl h+kSHLQkYR+ Bradi5g20520.3.p 23 KQRLRWTPELHRRFVDAVAKLGGPDKATPKSVLRLMGIKGLTLFHLKSHLQKYRM 77 79****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.737	20	80	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.0E-32	20	78	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.2E-25	23	77	IPR006447	Myb domain, plants
SuperFamily	SSF46689	2.51E-17	23	78	IPR009057	Homeodomain-like
Pfam	PF00249	4.5E-10	25	76	IPR001005	SANT/Myb domain
Pfam	PF14379	7.5E-16	122	155	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MFEGSYGGGC AAGAEAALSR DPKQRLRWTP ELHRRFVDAV AKLGGPDKAT PKSVLRLMGI 60 KGLTLFHLKS HLQKYRMGRQ TKKATDLELA SSGGFAAGDI SFSIGTPRLV PAGDDNREIS 120 PTDTLRYQIQ VQRKLHEQLE VQKKLHARIE AQGRNAMM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-22	23	79	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-22	23	79	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-22	23	79	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-22	23	79	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269\|PubMed:15634699, ECO:0000269\|PubMed:26586833}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi5g20520.3.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003580464.2	1e-109	LOW QUALITY PROTEIN: myb family transcription factor PHL11
Swissprot	Q8LAJ7	3e-47	PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBL	A0A2K2CIC7	1e-113	A0A2K2CIC7_BRADI; Uncharacterized protein
STRING	BRADI5G20520.1	1e-110	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	6e-49	G2-like family protein

Link Out ? help Back to Top
Phytozome	Bradi5g20520.3.p
Entrez Gene	100839058

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]