PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi5g20520.1.p

Common Name

BRADI_5g20520, LOC100839058

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

G2-like

Protein Properties

Length: 267aa MW: 29589.6 Da PI: 9.0084

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi5g20520.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.3	3.6e-33	23	77	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWtpeLH+rFv+av++LGG++kAtPk++l+lm++kgLtl h+kSHLQkYR+ Bradi5g20520.1.p 23 KQRLRWTPELHRRFVDAVAKLGGPDKATPKSVLRLMGIKGLTLFHLKSHLQKYRM 77 79****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.737	20	80	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-31	20	78	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.81E-17	23	78	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-24	23	77	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-9	25	76	IPR001005	SANT/Myb domain
Pfam	PF14379	1.0E-21	122	165	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MFEGSYGGGC AAGAEAALSR DPKQRLRWTP ELHRRFVDAV AKLGGPDKAT PKSVLRLMGI 60 KGLTLFHLKS HLQKYRMGRQ TKKATDLELA SSGGFAAGDI SFSIGTPRLV PAGDDNREIS 120 PTDTLRYQIQ VQRKLHEQLE VQKKLHARIE AQGRYLKAIL EKAKKNISVD INGSPNIEST 180 RSQFMDFNLD LLGLMDNGTQ MYEENSEQLM KAISDNNLKD NNLDFQLYDV GSQEAKNVRC 240 TPRTEDLLLL DLNIKGGHDL SSTGMQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-21	23	79	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-21	23	79	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-21	23	79	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-21	23	79	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi5g20520.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003580464.2	0.0	LOW QUALITY PROTEIN: myb family transcription factor PHL11
TrEMBL	I1J1D6	0.0	I1J1D6_BRADI; Uncharacterized protein
STRING	BRADI5G20520.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3940	34	70
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	7e-57	G2-like family protein

Link Out ? help Back to Top
Phytozome	Bradi5g20520.1.p
Entrez Gene	100839058