PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g20290.2.p
Common NameBRADI_5g20290
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 507aa    MW: 53150.1 Da    PI: 6.4074
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g20290.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.31e-30246304259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Bradi5g20290.2.p 246 SDLWAWRKYGQKPIKGSPHPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 304
                       699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.856240306IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.6E-31243306IPR003657WRKY domain
SuperFamilySSF1182903.53E-26243306IPR003657WRKY domain
SMARTSM007748.7E-38245305IPR003657WRKY domain
PfamPF031068.3E-26247304IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MCDYFLQRMD GDQAGGGDLT DIVRAGGAMP GNSNSGGGGG AGDDLPSTAV GADEWHHHLQ  60
QPLLFPPPSP SPDAADVVFG NGDPFAGLGG DPFSSDYSSD FGLDVGAMAP KHVGFDAAGI  120
SGGQMLDMGC GGRKPLMPRG MGMQQQQMPG GMGMGAPRQL MPSPASLSPI AIRPYPAMTA  180
GDMVKLGITA GQAAGCAIDA AVAGMQMSSS PRTAGIKRRK NQARKVVCIP APTTAGSRPT  240
GEVVPSDLWA WRKYGQKPIK GSPHPRGYYR CSSSKGCSAR KQVERSRTDP NMLVITYTSE  300
HNHPWPTQRN ALAGSTRSHH GKNGGSGSSG AKSSQNEKQP QTNNNVKEER RDHAAAATTT  360
TTSTITTTTS ATASPMIVKL EETLLAGSSE ALLERDHQRA RDTAAGVLVD HSDLMDHVFS  420
ESYRPMIPES GHHEDFFADL AELESDPMSL IFSKEYMEAR PSGTTGGDHG QEKAVTATKD  480
LDPFDMLDWS TTASTAGSTF EQGKGG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-24220307280Disease resistance protein RRS1
5w3x_D3e-24220307280Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g20290.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024311256.10.0probable WRKY transcription factor 4
SwissprotO647472e-70WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBLA0A0Q3KW100.0A0A0Q3KW10_BRADI; Uncharacterized protein
STRINGBRADI5G20290.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25923888
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.15e-66WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]