PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi5g20051.1.p | ||||||||
Common Name | BRADI_5g20051, LOC100831814 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 345aa MW: 37638.3 Da PI: 6.621 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.4 | 1.8e-14 | 15 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ lv+ +++ Gg+ +W+ ++ g++R++k+c++rw +yl Bradi5g20051.1.p 15 KGPWTEEEDKTLVEHIQKRGGHvgSWRGLPKAAGLNRCGKSCRLRWTNYL 64 79**********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.1 | 1.5e-16 | 70 | 114 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T +++ l+v+++++lG++ W+tIa ++ gRt++++k++w+++ Bradi5g20051.1.p 70 RGNFTDDDERLIVRLHALLGNK-WSTIATHLE-GRTDNEIKNYWNTH 114 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-20 | 7 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.705 | 10 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.24E-27 | 12 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-8 | 14 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-13 | 15 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.36E-7 | 17 | 64 | No hit | No description |
PROSITE profile | PS51294 | 26.314 | 65 | 119 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.6E-25 | 68 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.8E-15 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-14 | 70 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.01E-11 | 72 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MGRSPCCCHE AGVKKGPWTE EEDKTLVEHI QKRGGHVGSW RGLPKAAGLN RCGKSCRLRW 60 TNYLRPDIKR GNFTDDDERL IVRLHALLGN KWSTIATHLE GRTDNEIKNY WNTHIRKKLL 120 RMGVDPVTHQ QLPPEHQHHR SNQHLPEPLL WAAAAASLGG QLDTGLIMQA QLLQQLLQAI 180 GSSSNNNTNS TSSFVANLAA GAANAMLGSS ASIVPNLLLQ DQTMGLLSGS ANYLQPGYLG 240 NMSNFAEQDV VQQQLINAAT STMARDGTSS SAAAEPAGHH QQQQHCGTAV AFVSDDAVAP 300 ALERPPVVQE FADLLEPMEQ LPNLCSLESD SFWKDILEDS YRLC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-26 | 15 | 119 | 7 | 108 | B-MYB |
1h8a_C | 2e-26 | 15 | 119 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi5g20051.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK243271 | 1e-135 | AK243271.1 Oryza sativa Japonica Group cDNA, clone: J100049K04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003581590.2 | 0.0 | transcription factor MYB39 | ||||
TrEMBL | A0A0Q3P5X8 | 0.0 | A0A0Q3P5X8_BRADI; Uncharacterized protein | ||||
STRING | BRADI5G20050.1 | 1e-159 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6265 | 29 | 55 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 4e-70 | myb domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | Bradi5g20051.1.p |
Entrez Gene | 100831814 |