PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g19380.1.p
Common NameBRADI_5g19380, LOC100842816
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 448aa    MW: 49461 Da    PI: 5.9866
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g19380.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.9e-1659103147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       r +WT++E++l+++a +++G   W++I +++g ++t+ q++s+ qk+
  Bradi5g19380.1.p  59 REKWTEDEHKLFLEAMHLHGRA-WRRIQEHIG-TKTAVQIRSHAQKF 103
                       789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.22E-1554106IPR009057Homeodomain-like
PROSITE profilePS5129420.27154108IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.9E-956109IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-1457106IPR006447Myb domain, plants
SMARTSM007171.2E-1258106IPR001005SANT/Myb domain
PfamPF002492.4E-1459102IPR001005SANT/Myb domain
CDDcd001676.76E-1061104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MACFEQTKAI DDQRPGAAQV GHQNITEDLR NPQNSSDIDM LAEARVPKAR KPYMITKQRE  60
KWTEDEHKLF LEAMHLHGRA WRRIQEHIGT KTAVQIRSHA QKFFSKVIRE SSGDSSNSSG  120
AAAPAIQIPP PRPKRKSVHP YPCNMRSASG NLARELPRLQ KPQLQMQQTL CEQVNGSPTS  180
VVTASLIGSE NFDSDTSTID IEERCPTSSI ATDEFAVQVP PTDAEEVKGS NTSKEVVCDT  240
SEAPVLKLFG KRVVVNDSHQ RPNLCNMQTV TEMELDASAE TTTSGTGKFS SHGASEENTW  300
NPWLTNMQQF MCYLPQGAVF FSYNDGSVPY PQLSNPKPVT SDQQHQQQPS EAEYKLTRRE  360
ASLAESNTTS SSVPETTTQC SDYAESCTKA NGDDDTIVPV AGFRKYVSPN SIHQRGFMPY  420
KRCAAESKVQ PQAPGEEADG EMTRLCL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g19380.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3550064e-80AK355006.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1014J06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580392.10.0protein REVEILLE 7-like
TrEMBLA0A0Q3IDM30.0A0A0Q3IDM3_BRADI; Uncharacterized protein
STRINGBRADI5G19380.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27223686
Representative plantOGRP12551549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37260.15e-33MYB_related family protein