PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi5g18961.1.p | ||||||||
Common Name | BRADI_5g18961, LOC100840596 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | GRF | ||||||||
Protein Properties | Length: 239aa MW: 25439.1 Da PI: 11.1514 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 77.4 | 1.5e-24 | 139 | 183 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 +++pgrCrRtDGKkWRCsr v++g k+CErH+hrgr rsrk++e+ Bradi5g18961.1.p 139 EPQPGRCRRTDGKKWRCSRGVVPGLKYCERHVHRGRGRSRKPVEA 183 689***************************************985 PP | |||||||
2 | QLQ | 47.4 | 5.8e-17 | 71 | 106 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++T +Q q+L+ Q+l+y+y+aa++PvP +L+++i+k Bradi5g18961.1.p 71 SLTFMQRQELECQVLIYRYFAASAPVPVHLVLPIWK 106 799********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 5.1E-4 | 70 | 106 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 19.641 | 71 | 106 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.1E-10 | 71 | 105 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 23.959 | 139 | 183 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.1E-19 | 140 | 182 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MTERKPACSP PSKLPRLSGA RVDDGEVTMA APSPLVLGLG LGVGGYRSDS DKEASASSSR 60 DTRPTPKPTP SLTFMQRQEL ECQVLIYRYF AASAPVPVHL VLPIWKSLAS SSSSSSGLQR 120 FPSLTGLGRL CFDQRSSVEP QPGRCRRTDG KKWRCSRGVV PGLKYCERHV HRGRGRSRKP 180 VEAAATNAIP IRAVHADAGA QAADARSLAL PLPPPQQQRF SSTGAGVLVV HGAARAPR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi5g18961.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010227228.1 | 1e-171 | growth-regulating factor 12 | ||||
Swissprot | Q6AWX7 | 6e-76 | GRF12_ORYSJ; Growth-regulating factor 12 | ||||
TrEMBL | A0A0Q3ECM3 | 1e-169 | A0A0Q3ECM3_BRADI; Uncharacterized protein | ||||
STRING | Traes_2BL_DE9A7327E.1 | 4e-86 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6221 | 30 | 51 | Representative plant | OGRP460 | 16 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36400.1 | 4e-33 | growth-regulating factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Bradi5g18961.1.p |
Entrez Gene | 100840596 |
Publications ? help Back to Top | |||
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