PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g18850.1.p
Common NameBRADI_5g18850
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 198aa    MW: 20438.6 Da    PI: 4.9955
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g18850.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.55.3e-161361255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                       y+G+r  ++ g+Wv+eIr+p+    + +r++lg+f t+e+Aa a++ a+++l+g
  Bradi5g18850.1.p 13 FYRGIR--SRCGKWVSEIREPR----KaRRIWLGTFPTPEMAAVAYDVAARALRG 61
                      69***5..779*********94....36*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.0471369IPR001471AP2/ERF domain
SMARTSM003801.5E-291375IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-181369IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.1E-271470IPR001471AP2/ERF domain
CDDcd000182.14E-261470No hitNo description
PfamPF008476.0E-81461IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MSEHGGSSGK HPFYRGIRSR CGKWVSEIRE PRKARRIWLG TFPTPEMAAV AYDVAARALR  60
GPDAALNFPA IAASRPAPAS TSADDIRAAA AAAAASLAGG GGIAPPGGAA GSAVQQQQQF  120
GGGSGTAAGS EEAASIGANY YNQQYFLDEE ALFETPQFLR SMAAGMMMSP PRLSPDSSDE  180
SPDPSEAGES LWSYRDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-13669772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g18850.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6070016e-74AL607001.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088I22, complete sequence.
GenBankAP0149606e-74AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126126e-74CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8551676e-74CR855167.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0127A14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580357.11e-104ethylene-responsive transcription factor ERF025
SwissprotQ9FJ906e-47ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A0Q3GSY21e-137A0A0Q3GSY2_BRADI; Uncharacterized protein
STRINGBRADI5G18850.11e-104(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36542762
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.13e-22ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]