PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g18717.1.p
Common NameBRADI_5g18717
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 815aa    MW: 87471.4 Da    PI: 5.028
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g18717.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.52.7e-19112167156
                       TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       +r+  ++++eq++eL++lF k+++p++ +r+eL+++l L+ +qVk+WFqNrR++ k
  Bradi5g18717.1.p 112 KRPYVRHSSEQIQELQALFDKCPHPDEMQRAELSRRLFLDPSQVKFWFQNRRTQTK 167
                       789999**********************************************9987 PP
2START162.92.3e-513205551206
                       HHHHHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS......SCEEEEEEEECCS.CHHHHHHHHHCCCGGCT-TT-S.. CS
             START   1 elaeeaaqelvkkalaeepgWvkss........esengdevlqkfeeskv.....dsgealrasgvvd.mvlallveellddkeqWdetla.. 77 
                       ela +a++elvk+a+ e+p+W+ s+        e +n++e+l +f++  +     +++ea+r+sg+v+ ++++ lve l+d + +W++ +   
  Bradi5g18717.1.p 320 ELAKSAMDELVKMAQMEDPLWTPSVslsdspakETLNYEEYLNTFSPCIGvkpagFQSEASRESGIVIsDDSVALVEALMDER-RWSNIFScm 411
                       57899*****************99999*******************99889**************998345679*********.999999999 PP

                       ..EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--......-TTSEE-EESSEEEEEEE CS
             START  78 ..kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.....sssvvRaellpSgiliep 156
                         k +t++ is+g      gal l++aelq+lsplvp R+ +f+R+++qlg+g w++vdvS+d     +      +   + +++lpSg+l+++
  Bradi5g18717.1.p 412 vaKSSTIAEISTGvagsrdGALLLIQAELQVLSPLVPiRKATFLRFCKQLGEGAWAVVDVSIDGLVVDQGlaaasTTANMNCRRLPSGCLVQQ 504
                       99***********************************************************985433332333447778999*********98 PP

                       ECTCE.EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
             START 157 ksngh.skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                       +  ++ +kv wveh++++++++h l+rsl++sgla ga +w+atlqrqc++
  Bradi5g18717.1.p 505 DTRNGfCKVKWVEHAEYDESSVHPLYRSLLRSGLALGAGRWLATLQRQCKC 555
                       877777*******************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.67E-1899167IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-20102168IPR009057Homeodomain-like
PROSITE profilePS5007116.973109169IPR001356Homeobox domain
SMARTSM003891.3E-16111173IPR001356Homeobox domain
PfamPF000466.7E-17112167IPR001356Homeobox domain
CDDcd000862.01E-16112167No hitNo description
PROSITE patternPS000270144167IPR017970Homeobox, conserved site
PROSITE profilePS5084842.76311558IPR002913START domain
SuperFamilySSF559615.68E-24314555No hitNo description
CDDcd088755.18E-104315553No hitNo description
SMARTSM002349.7E-35320555IPR002913START domain
PfamPF018527.7E-44321555IPR002913START domain
SuperFamilySSF559616.78E-18577807No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 815 aa     Download sequence    Send to blast
MPREKAMSFL GFSDDDGGDG ALTGMELPFP GAGTGVFIPT PALSVATADA AGHGGDGGRV  60
VPVGCAGGGT VRSASEAENE RRSRTIDHLD VVSGGGFGRD DDAACGMPRK RKRPYVRHSS  120
EQIQELQALF DKCPHPDEMQ RAELSRRLFL DPSQVKFWFQ NRRTQTKAKL VRDENVQLRQ  180
ENDRLRAENL CIREAMRHPV CGNCGRPVVL GVLSLEEQHL RAQNARLTEE LSRVCAASSE  240
FLGKSISLPA PLQTHQPEPM PGSRVQPAAG GVGSVPSTTV ASSTITEFTG TASTSSGTAI  300
MTMSEEPLEI AGIDKSVLLE LAKSAMDELV KMAQMEDPLW TPSVSLSDSP AKETLNYEEY  360
LNTFSPCIGV KPAGFQSEAS RESGIVISDD SVALVEALMD ERRWSNIFSC MVAKSSTIAE  420
ISTGVAGSRD GALLLIQAEL QVLSPLVPIR KATFLRFCKQ LGEGAWAVVD VSIDGLVVDQ  480
GLAAASTTAN MNCRRLPSGC LVQQDTRNGF CKVKWVEHAE YDESSVHPLY RSLLRSGLAL  540
GAGRWLATLQ RQCKCWATLQ SCVAAWEQYS SDVLAAGTQS LLKLAQRMME SFFSGVSASS  600
ALEWSKLDGF TDNIGNDVRI IERKSVDEPG VPPGVVLCAA TSVWMLVTPE RLFQFLCDEG  660
TRAEWDILST GGPMQEVTNI AKGQQDGNTV SLLRTNTTNT QQNGILILQE TCTDASGSMV  720
VYAPVDIPAM HLVMSGGDSA SVPLLPSGFV ILPDGPTIPG DGHKTCGSLL TFAFQILVKN  780
SEPTAKLTVE SIQTVNNLIS CTINRIKTAL HCDV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107113PRKRKRP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g18717.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581542.20.0homeobox-leucine zipper protein ROC4
SwissprotQ7Y0V90.0ROC4_ORYSJ; Homeobox-leucine zipper protein ROC4
TrEMBLA0A0Q3ECH50.0A0A0Q3ECH5_BRADI; Uncharacterized protein
STRINGBRADI5G18717.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wei J, et al.
    GL2-type homeobox gene Roc4 in rice promotes flowering time preferentially under long days by repressing Ghd7.
    Plant Sci., 2016. 252: p. 133-143
    [PMID:27717449]
  3. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]