PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g18530.3.p
Common NameBRADI_5g18530, LOC100826618
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 631aa    MW: 65715.8 Da    PI: 8.5656
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g18530.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-0591113123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C+ C+k F r  nL+ H r H
  Bradi5g18530.3.p  91 FVCEVCNKGFQREQNLQLHRRGH 113
                       89*******************88 PP
2zf-C2H211.50.00094168190123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC +C+k++  +s+ k H + +
  Bradi5g18530.3.p 168 WKCDKCSKRYAVQSDWKAHSKIC 190
                       58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.8E-690113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.38E-790113No hitNo description
PfamPF121714.2E-591113IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015711.09491113IPR007087Zinc finger, C2H2
SMARTSM003550.004191113IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.3E-4156189IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.38E-7163188No hitNo description
SMARTSM00355140168188IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MASNSSAAEA AAFFGIRDGD QQDQMKPLIS QQQQLAAALP GMVANAAAPA TSSQGAPAPA  60
APPAKKKRTL PDPDADVIAL SPKTLMATNR FVCEVCNKGF QREQNLQLHR RGHNLPWKLK  120
QKNPNQVQRR RVYLCPEPTC VHHDPSRALG DLTGIKKHFC RKHGEKKWKC DKCSKRYAVQ  180
SDWKAHSKIC GTREYRCDCG TLFSRRDSFI THRAFCDALA QESARLPPPT SLSSLTSHLY  240
GGGASNAGNM ALSLSQVGSH LSSTMHHDHP ELLRLGGNGG GGGGSSIAAR LDHLLSPSGP  300
SAFRPPLSSP FFLNAAPGHG PDFGGDDHQN GAGPSSFLGQ PSNNKPFHGL MQLPDLQGNG  360
AGGGPAAGPS SGPHGLFNLG GFFSTNGNSS GSSGHEHAAS QGGGMMNSND NNQFSGGSDV  420
SAAGIFGGNN NFVGGSGDHH QIAGMYNEQQ AMQHQQQQQL LPQMSATALL QKAAQMGATS  480
SNNNNGVAGS MFRGFVGSAS AHAQQQMGQS QRQNEQQAHL NDLMNSLAGG NPAGIMFGAA  540
GSNTGAGMFD PRMCDMEAHE VKFSQGGGDM TRDFLGVGGG GIVQQRGMSA ATPRGGGEQH  600
HQSSSDMSSL EAEMKSASSY NGGGGGGRMA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-34164234370Zinc finger protein JACKDAW
5b3h_F4e-34164234370Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g18530.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1207230.0AK120723.1 Oryza sativa Japonica Group cDNA clone:J023002I18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580339.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_010240270.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_024311531.10.0protein indeterminate-domain 5, chloroplastic
TrEMBLI1J0N20.0I1J0N2_BRADI; Uncharacterized protein
STRINGBRADI5G18530.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-103indeterminate(ID)-domain 2