PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi5g18530.3.p | ||||||||
Common Name | BRADI_5g18530, LOC100826618 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 631aa MW: 65715.8 Da PI: 8.5656 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.1 | 1.5e-05 | 91 | 113 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H Bradi5g18530.3.p 91 FVCEVCNKGFQREQNLQLHRRGH 113 89*******************88 PP | |||||||
2 | zf-C2H2 | 11.5 | 0.00094 | 168 | 190 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + Bradi5g18530.3.p 168 WKCDKCSKRYAVQSDWKAHSKIC 190 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 8.8E-6 | 90 | 113 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.38E-7 | 90 | 113 | No hit | No description |
Pfam | PF12171 | 4.2E-5 | 91 | 113 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 11.094 | 91 | 113 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0041 | 91 | 113 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 93 | 113 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.3E-4 | 156 | 189 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.38E-7 | 163 | 188 | No hit | No description |
SMART | SM00355 | 140 | 168 | 188 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 631 aa Download sequence Send to blast |
MASNSSAAEA AAFFGIRDGD QQDQMKPLIS QQQQLAAALP GMVANAAAPA TSSQGAPAPA 60 APPAKKKRTL PDPDADVIAL SPKTLMATNR FVCEVCNKGF QREQNLQLHR RGHNLPWKLK 120 QKNPNQVQRR RVYLCPEPTC VHHDPSRALG DLTGIKKHFC RKHGEKKWKC DKCSKRYAVQ 180 SDWKAHSKIC GTREYRCDCG TLFSRRDSFI THRAFCDALA QESARLPPPT SLSSLTSHLY 240 GGGASNAGNM ALSLSQVGSH LSSTMHHDHP ELLRLGGNGG GGGGSSIAAR LDHLLSPSGP 300 SAFRPPLSSP FFLNAAPGHG PDFGGDDHQN GAGPSSFLGQ PSNNKPFHGL MQLPDLQGNG 360 AGGGPAAGPS SGPHGLFNLG GFFSTNGNSS GSSGHEHAAS QGGGMMNSND NNQFSGGSDV 420 SAAGIFGGNN NFVGGSGDHH QIAGMYNEQQ AMQHQQQQQL LPQMSATALL QKAAQMGATS 480 SNNNNGVAGS MFRGFVGSAS AHAQQQMGQS QRQNEQQAHL NDLMNSLAGG NPAGIMFGAA 540 GSNTGAGMFD PRMCDMEAHE VKFSQGGGDM TRDFLGVGGG GIVQQRGMSA ATPRGGGEQH 600 HQSSSDMSSL EAEMKSASSY NGGGGGGRMA * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 4e-34 | 164 | 234 | 3 | 70 | Zinc finger protein JACKDAW |
5b3h_F | 4e-34 | 164 | 234 | 3 | 70 | Zinc finger protein JACKDAW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi5g18530.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK120723 | 0.0 | AK120723.1 Oryza sativa Japonica Group cDNA clone:J023002I18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003580339.1 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_010240270.1 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_024311531.1 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
TrEMBL | I1J0N2 | 0.0 | I1J0N2_BRADI; Uncharacterized protein | ||||
STRING | BRADI5G18530.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 1e-103 | indeterminate(ID)-domain 2 |
Link Out ? help Back to Top | |
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Phytozome | Bradi5g18530.3.p |
Entrez Gene | 100826618 |