PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi5g18430.1.p

Common Name

BRADI_5g18430, LOC100833240

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Nin-like

Protein Properties

Length: 338aa MW: 38305.6 Da PI: 8.2092

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi5g18430.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	84.7	8.3e-27	196	245	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i+l d+++yF+lpi++A+k+L++++++LKr+CRqyGI+RWPhRkiksl Bradi5g18430.1.p 196 ASITLVDIAQYFHLPIREASKTLKIGVSILKRKCRQYGIPRWPHRKIKSL 245 689*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.725	180	265	IPR003035	RWP-RK domain
Pfam	PF02042	5.6E-22	197	245	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MDAVVSTLSA LAVFVNTTDH GAVRSVHGYR VVAKGGDCGW EKWVEREFAF SPSSCRELPA 60 PVVAPRLLSA DWVGRPVYHE GKMVGAWRCI LAFDSVAAVV PPPTPPPMLS PSGNPGLMSV 120 PSLYEDLNEV FQFQNSEKVP ELQCDPDEQS TRLDERERTS NEIGESDSDS DDDPQTGEGL 180 PEPVQKQRRA NQKYIASITL VDIAQYFHLP IREASKTLKI GVSILKRKCR QYGIPRWPHR 240 KIKSLDSLIH DLEYVIDDTE RDGVQREKAK HKKKEREMEK EKEKHDAIRA LAKRKKMLES 300 EKETITLKPA LDLMAETKQF REDVFKRRYR AKNIATR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi5g18430.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003581531.1	0.0	protein RKD5
TrEMBL	A0A0Q3IDA0	0.0	A0A0Q3IDA0_BRADI; Uncharacterized protein
STRING	BRADI5G18430.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10673	31	42
Representative plant	OGRP567	17	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	1e-42	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Bradi5g18430.1.p
Entrez Gene	100833240