PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi5g17800.2.p | ||||||||
Common Name | BRADI_5g17800, LOC100823737 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 569aa MW: 58562 Da PI: 6.3235 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.6 | 0.00019 | 92 | 110 | 1 | 19 |
EEETTTTEEESSHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrH 19 ++C++Cgk Fs+ +++ H Bradi5g17800.2.p 92 HVCKNCGKEFSSMDLFLDH 110 79*************9999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 7.2E-5 | 12 | 38 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.15E-5 | 16 | 38 | No hit | No description |
SMART | SM00355 | 2.7 | 16 | 38 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.494 | 16 | 43 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 0.001 | 17 | 38 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 18 | 38 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.15E-5 | 87 | 111 | No hit | No description |
SMART | SM00355 | 200 | 92 | 112 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.827 | 92 | 119 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.97E-8 | 260 | 283 | No hit | No description |
SMART | SM00355 | 0.77 | 261 | 283 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.8E-8 | 261 | 285 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.034 | 261 | 288 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 263 | 283 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.97E-8 | 390 | 417 | No hit | No description |
PROSITE profile | PS50157 | 9.515 | 395 | 417 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.62 | 395 | 417 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 6.0E-12 | 395 | 418 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 397 | 417 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 569 aa Download sequence Send to blast |
MLPWPPPPPQ ARPYKHFCRV CSKGFMCGSA LGGHMRTHAV SDGEPGAGAD DDDDDEPAVP 60 DAPWGPSSTS SPGTHVYALR ANLPNRLIRG CHVCKNCGKE FSSMDLFLDH GKCNSGEEGG 120 DGDAGGSLHS SPDPSVGDGD QEDASSLAAG WSKGKRSRRA KLIGSGEMLA MTSLDEPEEE 180 EDLANCLVML SSSSKADQPA RVADTNPEPC ASGTGKVHGR IMSQQPQPLA YVLPAPDPTM 240 VLPLALPAPQ HASAPIPRGM FECKACKKLF TSHQALGGHR ASHKKVKGCF AAKPESSVSA 300 SEPPHHAATL GGPNNEKSNA FAHAVVQVNV SSDADARTNY VDASTVGDRN DAGTSEAAEP 360 SLSMAIVTTG TADHEPPVVA LAPAVGSSKR KAKMHECSVC NRLFSSGQAL GGHKRCHWLT 420 SSTGEHGSIA PLRAEGLLGA AGYQLTLRPL VDAPEPELDL TIAANTSAGN SSLHLDTSAP 480 LYLQASAAPT SNNPSHQNKM AATSSHNVND AVGAGAAAEN EADSTASAKK ARLGGLKAVS 540 TTGETTPWLQ VGIGSSSADG DGKSTARE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi5g17800.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003581506.1 | 0.0 | uncharacterized protein LOC100823737 | ||||
TrEMBL | A0A0Q3GSG8 | 0.0 | A0A0Q3GSG8_BRADI; Uncharacterized protein | ||||
STRING | BRADI5G17800.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3524 | 32 | 62 | Representative plant | OGRP2521 | 8 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03510.1 | 4e-12 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi5g17800.2.p |
Entrez Gene | 100823737 |