PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi5g17722.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | SBP | ||||||||
Protein Properties | Length: 389aa MW: 41814.8 Da PI: 11.949 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 76.5 | 4.2e-24 | 113 | 163 | 1 | 51 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEE CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhe 51 +CqvegC+ l+ akeyhrrhkvCe+hskap v+v+g eqrfCqqCsr h Bradi5g17722.2.p 113 RCQVEGCHLALAGAKEYHRRHKVCEAHSKAPRVVVHGAEQRFCQQCSRSHV 163 6************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.8E-25 | 108 | 163 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 19.298 | 111 | 188 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.22E-22 | 112 | 164 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.2E-19 | 114 | 164 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MEGDGGAGHR ATAPWDLGMQ WAPPPATSAY PQHFMPPPPP AAMASAQRQQ QELTSLKLGK 60 RPCYLPGWRD GQLAQVGAAG HVDVNGGRRA VAAPEGKRKE KAAAATATAA VARCQVEGCH 120 LALAGAKEYH RRHKVCEAHS KAPRVVVHGA EQRFCQQCSR SHVAGAPFRA VRRPAARFPG 180 WCSLSSVIGQ SRRRHALAAD PDGARRVPRR PLQQRRPRRA HRREPRRPPR VPLLPRPLRP 240 GCGVGARQLA ARARGASAGS SGPRDAGPHA GPHRGRAAQA HHAHAGQGLQ QASRGYTRRR 300 SGPRPGRVGA PAGSPCGLTC WGLGSSPVLG YTMHARRRRQ VVACFVPEIY FVPWARLEPA 360 LFWSLCRPCN ISINLSWDSV IYSSCSGC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj0_A | 3e-15 | 114 | 163 | 6 | 55 | squamosa promoter-binding protein-like 12 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi5g17722.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT054238 | 2e-60 | BT054238.1 Zea mays full-length cDNA clone ZM_BFb0189E24 mRNA, complete cds. | |||
GenBank | BT054654 | 2e-60 | BT054654.2 Zea mays full-length cDNA clone ZM_BFb0036O05 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K2CHW2 | 0.0 | A0A2K2CHW2_BRADI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10303 | 34 | 39 | Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27370.4 | 6e-19 | squamosa promoter binding protein-like 10 |
Link Out ? help Back to Top | |
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Phytozome | Bradi5g17722.2.p |