PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi5g17722.1.p | ||||||||
Common Name | BRADI_5g17722, LOC100823130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 361aa MW: 37889.8 Da PI: 9.828 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.7 | 1.1e-40 | 113 | 189 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC+ l+ akeyhrrhkvCe+hskap v+v+g eqrfCqqCsrfh++sefD++krsCrrrLa+hnerrrk++ Bradi5g17722.1.p 113 RCQVEGCHLALAGAKEYHRRHKVCEAHSKAPRVVVHGAEQRFCQQCSRFHAMSEFDDAKRSCRRRLAGHNERRRKSN 189 6**************************************************************************87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 8.5E-34 | 108 | 175 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.163 | 111 | 188 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.79E-38 | 112 | 191 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.4E-32 | 114 | 187 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 361 aa Download sequence Send to blast |
MEGDGGAGHR ATAPWDLGMQ WAPPPATSAY PQHFMPPPPP AAMASAQRQQ QELTSLKLGK 60 RPCYLPGWRD GQLAQVGAAG HVDVNGGRRA VAAPEGKRKE KAAAATATAA VARCQVEGCH 120 LALAGAKEYH RRHKVCEAHS KAPRVVVHGA EQRFCQQCSR FHAMSEFDDA KRSCRRRLAG 180 HNERRRKSNA SEAMARGSAH THGVTSLVHL FAPYGALLPA SPAGALSLLS SARAAGATPW 240 QLIPTAPDAF PAGRSSSAAL DELIAENRAA LLACHFFPDR SGRGAESVPG SWQHAHAAPP 300 PAPAGHVTLD LMQAPTAGGL LRPTMRTPDR ASSRPAEDIP DDEAGRGPGV WAPLQGAHVA 360 * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-30 | 105 | 187 | 2 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi5g17722.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT054654 | 1e-107 | BT054654.2 Zea mays full-length cDNA clone ZM_BFb0036O05 mRNA, complete cds. | |||
GenBank | EU964656 | 1e-107 | EU964656.1 Zea mays clone 280651 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003581504.2 | 0.0 | squamosa promoter-binding-like protein 7 | ||||
Swissprot | Q01JD1 | 1e-100 | SPL7_ORYSI; Squamosa promoter-binding-like protein 7 | ||||
TrEMBL | A0A0Q3P560 | 0.0 | A0A0Q3P560_BRADI; Uncharacterized protein | ||||
STRING | OMERI04G16650.1 | 1e-101 | (Oryza meridionalis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33810.1 | 1e-35 | squamosa promoter binding protein-like 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi5g17722.1.p |
Entrez Gene | 100823130 |