PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g17640.1.p
Common NameBRADI_5g17640, LOC100821891
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 212aa    MW: 22433.8 Da    PI: 5.0805
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g17640.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.51.3e-164186352
               AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52
                      y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a ++
  Bradi5g17640.1.p 41 YHGVRMRS-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDVATLA 86
                      99***998.**********843...6*******************98665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.9E-113987IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-184099IPR016177DNA-binding domain
SMARTSM003807.2E-2940105IPR001471AP2/ERF domain
PROSITE profilePS5103221.7464099IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.7E-294099IPR001471AP2/ERF domain
PRINTSPR003676.2E-104152IPR001471AP2/ERF domain
CDDcd000185.08E-244199No hitNo description
PRINTSPR003676.2E-106379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MDDTPHEPRS PTSASSSSSS SSSVAAANKR PRRDDGQHPA YHGVRMRSWG KWVSEIREPR  60
KKSRIWLGTF ATAEMAARAH DVATLAVKGR GGAAQLNFPG LAHLLPRPAS AAPKDVRAAA  120
ILAAAPDFLP CDGANAKSPD SSSAAASPQP APSRDDDEAD PDDALFDLPD LLLDLRYESS  180
SALACASSWV VDDDMSAGGV FRLEEPLPWE Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1437991172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g17640.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010240212.11e-148ethylene-responsive transcription factor ERF039
SwissprotQ8LBQ74e-41ERF34_ARATH; Ethylene-responsive transcription factor ERF034
SwissprotQ9ZQP36e-42ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBLI1J0C21e-147I1J0C2_BRADI; Uncharacterized protein
STRINGBRADI5G17640.11e-148(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.17e-40ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]