PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g17630.1.p
Common NameBRADI_5g17630, LOC100821576
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 209aa    MW: 22669.4 Da    PI: 6.3978
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g17630.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.8e-184191155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      s y+GVr +  +grWv+eIr+p++   + r++lg+fg+ae+Aa+a++ a+++++g
  Bradi5g17630.1.p 41 STYHGVRMRN-WGRWVSEIREPRK---KSRIWLGTFGSAEKAARAHDVAALAIKG 91
                      569****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.88E-2141100IPR016177DNA-binding domain
CDDcd000184.76E-3141101No hitNo description
SMARTSM003806.2E-3342105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-3042100IPR001471AP2/ERF domain
PROSITE profilePS5103221.7994299IPR001471AP2/ERF domain
PfamPF008471.1E-124391IPR001471AP2/ERF domain
PRINTSPR003673.6E-94354IPR001471AP2/ERF domain
PRINTSPR003673.6E-96581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MKDTHKPRSR TSPAATFSSS SALSPPSGGA NKRPRKEGRH STYHGVRMRN WGRWVSEIRE  60
PRKKSRIWLG TFGSAEKAAR AHDVAALAIK GPAAHLNFPD LVHLLPRAAS AEPKDVQAAA  120
ALAAAMDFPG DTNGKNPDNT SDTLAVLPQP PPPHDETGLE GMLLDLPNLI LDMRFDSPSD  180
IPCDSSWVAD DNIYVDDAFN LEDLMLWD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1640991272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g17630.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581499.11e-151ethylene-responsive transcription factor ERF039
TrEMBLI1J0C11e-149I1J0C1_BRADI; Uncharacterized protein
STRINGBRADI5G17630.11e-150(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.13e-39ERF family protein