PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g17610.1.p
Common NameBRADI_5g17610, LOC100820976
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 296aa    MW: 31037.9 Da    PI: 5.3839
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g17610.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.4e-19113163155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       + y+GVr+++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Bradi5g17610.1.p 113 PSYRGVRRRS-WGKWVSEIREPRK---KSRIWLGTFPTAEQAARAHDVAALAIKG 163
                       57*****887.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.2E-13113163IPR001471AP2/ERF domain
CDDcd000184.48E-30113172No hitNo description
PROSITE profilePS5103224.21114171IPR001471AP2/ERF domain
SMARTSM003804.4E-36114177IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-22114172IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-32114172IPR001471AP2/ERF domain
PRINTSPR003673.9E-11115126IPR001471AP2/ERF domain
PRINTSPR003673.9E-11137153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
METDASHAPT TSSSSVSSST LSTSSSTSSL ANSAQQLPKK SPKPKYPKKR KRAAASPPPP  60
PAADQEHAAA TNNGAQGDQE SSSCCTEDLD NNAASGKAAA RPDAVSKSGF KHPSYRGVRR  120
RSWGKWVSEI REPRKKSRIW LGTFPTAEQA ARAHDVAALA IKGRAAHLNF PDRAHELPRP  180
DSNSPADIQA AAVKAAAQCE DTTSASSVPS FPAVDAASPD TEAAASAGTE EAEQEAVQQA  240
DHHSCGSDND ALLFDLPDLL LDLRDGLFWS PVWPAAAEEY DGSCVGLGEP LLWTE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-19109171972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14150PKPKYPKKRK
24450KYPKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g17610.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3559751e-107AK355975.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1028H04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010240211.10.0ethylene-responsive transcription factor ERF038
SwissprotQ8LBQ74e-47ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLI1J0B90.0I1J0B9_BRADI; Uncharacterized protein
STRINGBRADI5G17610.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.12e-40ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]