PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi5g17490.1.p | ||||||||
Common Name | BRADI_5g17490, LOC100844648 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 365aa MW: 38577.9 Da PI: 4.7715 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.2 | 9.9e-19 | 174 | 225 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdp+ +g r++lg+++t eAa+a+++a+ +++g+ Bradi5g17490.1.p 174 KYRGVRQRP-WGKFAAEIRDPKRRG--SRVWLGTYDTSVEAARAYDRAAFRMRGA 225 8********.**********96554..**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.0E-32 | 173 | 233 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.6E-14 | 174 | 224 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.05E-22 | 174 | 233 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.144 | 174 | 232 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.61E-30 | 174 | 233 | No hit | No description |
SMART | SM00380 | 1.8E-36 | 174 | 238 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-13 | 175 | 186 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-13 | 214 | 234 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MDFAGEMDDF ALEIIREHLL GGDGSTTTAV VPATAADNNH EFPDGGVTFP VPQPPSAAPE 60 PAYLQPAMSF FPQEEQLQGR PYAYTDLTQE YVNSSPAGAD MGEVVTFRAP EPVMIQFGGE 120 PSPVATTARA PPSSLTISLP RSSGGSFGWP PRAQQAAAAA AGAAAAPDCQ DFRKYRGVRQ 180 RPWGKFAAEI RDPKRRGSRV WLGTYDTSVE AARAYDRAAF RMRGAKAILN FPNEVGTRGA 240 ELWAPPPPPA PTSQAATGTT NKRKRSQDQE EYCYPEVEAA NKAVKTEAAP SPSADTPSSV 300 SREMSTGTAC STVTSAATSE GGFPPLTPSS SGWEQYWEAL LGGMPLLSPL SPHPALGFPQ 360 LTVS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-26 | 173 | 237 | 4 | 68 | ATERF1 |
3gcc_A | 2e-26 | 173 | 237 | 4 | 68 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00549 | DAP | Transfer from AT5G47230 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi5g17490.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373575 | 1e-79 | AK373575.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3035F11. | |||
GenBank | KT962211 | 1e-79 | KT962211.1 Hordeum vulgare cultivar CI9831 ERF5 mRNA, complete cds. | |||
GenBank | KT962212 | 1e-79 | KT962212.1 Hordeum vulgare cultivar AC Metcalfe ERF5 mRNA, complete cds. | |||
GenBank | KT962213 | 1e-79 | KT962213.1 Hordeum vulgare cultivar Zheddar ERF5 mRNA, complete cds. | |||
GenBank | KT962214 | 1e-79 | KT962214.1 Hordeum vulgare cultivar CDC Copeland ERF5 mRNA, complete cds. | |||
GenBank | KT962215 | 1e-79 | KT962215.1 Hordeum vulgare cultivar H106371 ERF5 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003581490.1 | 0.0 | AP2/ERF and B3 domain-containing protein Os01g0693400 | ||||
TrEMBL | I1J0A3 | 0.0 | I1J0A3_BRADI; Uncharacterized protein | ||||
STRING | BRADI5G17490.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47230.1 | 2e-32 | ethylene responsive element binding factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Bradi5g17490.1.p |
Entrez Gene | 100844648 |