PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g17480.1.p
Common NameBRADI_5g17480, LOC100832404
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 290aa    MW: 30566.3 Da    PI: 6.7961
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g17480.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.5e-18147197255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr ++ +g+++AeIrdp +ng  +r++lg+++ ae+Aa a+++a+ +++g
  Bradi5g17480.1.p 147 HYRGVRMRP-WGKFAAEIRDPAKNG--ARVWLGTYDAAEDAALAYDRAAYRMRG 197
                       69*******.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.81E-27146205No hitNo description
SuperFamilySSF541712.22E-22147207IPR016177DNA-binding domain
PROSITE profilePS5103223.433147205IPR001471AP2/ERF domain
PfamPF008472.4E-12147197IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-30147205IPR001471AP2/ERF domain
SMARTSM003808.4E-37147211IPR001471AP2/ERF domain
PRINTSPR003671.3E-12148159IPR001471AP2/ERF domain
PRINTSPR003671.3E-12187207IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MLLNPAASEA LVLDSIRQHL MEETHGAAAP SQGQKGGAMT RPAYLRSASF GSLVADQWSS  60
SLPFRADDSD DMVVYGALRD AFSCGWLPDG SFAAVKPEPL PSSPDSYAIA DASSSSCFAF  120
LDPDTPSEEA MPAPTRSEEA SARGKQHYRG VRMRPWGKFA AEIRDPAKNG ARVWLGTYDA  180
AEDAALAYDR AAYRMRGSRA LLNFPLRITS EIAAAAAAGL KRPAALEPAT SNSSSSSSSS  240
SGSPKRRKRG EAAAASMAMP LVPPPSSQAW FAPVEQVVGM APRLEQLVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-36142210168ATERF1
3gcc_A2e-36142210168ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g17480.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5701211e-85EF570121.1 Thinopyrum intermedium ethylene-responsive factor (ERF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580272.10.0ethylene-responsive transcription factor 2
TrEMBLI1J0A20.0I1J0A2_BRADI; Uncharacterized protein
STRINGBRADI5G17480.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38002972
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.13e-39ethylene responsive element binding factor 1