PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g17395.2.p
Common NameBRADI_5g17395, LOC100842931
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 240aa    MW: 26170.6 Da    PI: 8.7248
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g17395.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.84e-32160218159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK+vk+s +prsYYrCt+++C+vkk+ver +ed ++v++tYeg+H+h+
  Bradi5g17395.2.p 160 LDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHTHT 218
                       59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-33145218IPR003657WRKY domain
SuperFamilySSF1182902.22E-28152218IPR003657WRKY domain
PROSITE profilePS5081128.92155217IPR003657WRKY domain
SMARTSM007741.4E-37160219IPR003657WRKY domain
PfamPF031064.2E-25161217IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MEGTSRLEAC LPSLYALDPY TAPPPPLPPF LAPLPNQQHK LLQMPLVVQE QSVNHGVMFS  60
SDHGGGGLYP LLPGIPFCHS AAAAAASDKP ETGFAPLAAG EVGTSAARAG NEVASTTTTT  120
ATRHGASSWW KGAEKGKMKV RRKMREPRFC FQTRSDVDVL DDGYKWRKYG QKVVKNSLHP  180
RSYYRCTHSN CRVKKRVERL SEDCRMVITT YEGRHTHTPC SDDDAGGGEH TGACAFTYF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-24151217874Probable WRKY transcription factor 4
2lex_A2e-24151217874Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00618PBMTransfer from AT2G44745Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g17395.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014751531.10.0probable WRKY transcription factor 12
TrEMBLA0A0Q3KUK21e-179A0A0Q3KUK2_BRADI; Uncharacterized protein
STRINGBRADI5G17395.11e-145(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113838130
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.14e-59WRKY family protein