PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g17370.1.p
Common NameBRADI_5g17370
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GATA
Protein Properties Length: 444aa    MW: 48601.4 Da    PI: 7.9475
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g17370.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.61.3e-16741135
              GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                      C++Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Bradi5g17370.1.p  7 CRHCGVTSTPLWRNGPADKPVLCNACGSRWRTKGS 41
                      ****************77777***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.9E-9153IPR000679Zinc finger, GATA-type
CDDcd002021.97E-15652No hitNo description
SuperFamilySSF577161.76E-11646No hitNo description
Gene3DG3DSA:3.30.50.105.2E-13741IPR013088Zinc finger, NHR/GATA-type
PfamPF003203.2E-14741IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.385740IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MVKEGPCRHC GVTSTPLWRN GPADKPVLCN ACGSRWRTKG SLENYTPMHS RDDIDVEEPR  60
VSKLKPPMSR LKEQRQLKKR PSHIIKKNEP FSDQNFRKMG DADPSRSSSG SAVSYSESCA  120
PYGSADASEM TGSAQSHAWE SLVPSRKRSC VTRSKPSQVE KLVKDLNSIM HEEQFYCLSG  180
SSEEDLLYHS ETAVGSFEIG YGSVLLRHAN SKSVDGDSEA NSVPADNKSY VTSESLSYSG  240
TASFVVHGES KGASNSNALS EKPKWFPVQI HDNARRDKLH YSKPHTLENV DSALVSVALE  300
VKDSKEIGEK ENISAVKCLV KPAMKHLKRP HESQLQSCQE VKETTRSPKR GSESGAMAPQ  360
FKGSFLPKSG GALNLFMLPP DKLSMLAPQY VDDSDQDLLL EVPPNGRHPE AELLCPLSQL  420
SSVSRSSTSE GRVADGDGRL RQP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g17370.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227218.10.0uncharacterized protein LOC100829762
TrEMBLI1J0890.0I1J089_BRADI; Uncharacterized protein
STRINGBRADI5G17370.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44243464
Representative plantOGRP27491530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.34e-58GATA transcription factor 26