PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi5g17170.2.p | ||||||||
Common Name | BRADI_5g17170, LOC100825679 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 243aa MW: 27208.5 Da PI: 5.0868 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.6 | 2.5e-19 | 53 | 106 | 4 | 56 |
-SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ft+eq++ Le+ F+ + ++ +e++eLA++lgL+ rqV +WFqN+Ra+++ Bradi5g17170.2.p 53 KRRFTEEQIRSLESTFHAhQAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 106 458**************989*********************************9 PP | |||||||
2 | HD-ZIP_I/II | 122.7 | 1.8e-39 | 52 | 144 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +krr+++eq+++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+d++aL+++ydal+++ e+L++++ +L+++l+e Bradi5g17170.2.p 52 RKRRFTEEQIRSLESTFHAHQaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDFAALRAKYDALHSRVESLKQDKLTLTTKLHE 144 8*******************99******************************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.653 | 47 | 108 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.68E-18 | 48 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.6E-18 | 50 | 112 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.76E-16 | 52 | 109 | No hit | No description |
Pfam | PF00046 | 9.2E-17 | 53 | 106 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-19 | 54 | 113 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 5.8E-7 | 79 | 88 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 83 | 106 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.8E-7 | 88 | 104 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 4.0E-13 | 108 | 149 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MDRGEYQQQQ QFLMPPPALQ TMQQQRELCV PLMEEQLLMG GRRGGGAASE MRKRRFTEEQ 60 IRSLESTFHA HQAKLEPREK AELARELGLQ PRQVAIWFQN KRARWRSKQL EHDFAALRAK 120 YDALHSRVES LKQDKLTLTT KLHELSERLR EQGGGAATAT ASSSSCGDGC SEELEVDDKR 180 NIGVEPPESC VLGGCATPAD VSVDSECGDH VDYSGGFPES FCATPELWEP WPWPPVEWNA 240 VA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 39 | 45 | GGRRGGG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi5g17170.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT224376 | 1e-130 | KT224376.1 Triticum aestivum cultivar RAC875 HDZipI-5 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003580250.1 | 1e-180 | homeobox-leucine zipper protein HOX22 | ||||
Swissprot | Q01IK0 | 4e-85 | HOX22_ORYSI; Homeobox-leucine zipper protein HOX22 | ||||
Swissprot | Q7XUJ5 | 4e-85 | HOX22_ORYSJ; Homeobox-leucine zipper protein HOX22 | ||||
TrEMBL | A0A0Q3P4X7 | 1e-178 | A0A0Q3P4X7_BRADI; Uncharacterized protein | ||||
STRING | BRADI5G17170.1 | 1e-177 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4027 | 31 | 75 | Representative plant | OGRP14821 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.2 | 7e-29 | homeobox 7 |
Link Out ? help Back to Top | |
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Phytozome | Bradi5g17170.2.p |
Entrez Gene | 100825679 |