PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g16450.1.p
Common NameBRADI_5g16450, LOC100830181
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 488aa    MW: 51672.1 Da    PI: 8.3396
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g16450.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-18218268256
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                        y+GVr+++ +g+WvAeIr p++   r+r +lg+f++ae+Aa a+++ + kl+ge
  Bradi5g16450.1.p 218 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDSAEDAAMAYDREAFKLRGE 268
                       59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-22218277IPR016177DNA-binding domain
PROSITE profilePS5103222.787218275IPR001471AP2/ERF domain
SMARTSM003805.0E-38218281IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-31218276IPR001471AP2/ERF domain
PRINTSPR003673.5E-10219230IPR001471AP2/ERF domain
CDDcd000181.46E-30219276No hitNo description
PfamPF008478.0E-12219268IPR001471AP2/ERF domain
PRINTSPR003673.5E-10241257IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MDASGESGGG GRGSTGRRSG KGLTPIQARR QQQQLAPVLE NASAAALLRP LKKIGRSPDR  60
LHRTTSTLST TSSSSSAPAS PRSSSVSNAA VSPPSARHIF PYAYEPIIAP AASTTTTHGR  120
SPRLDLHPWP QSSTSVSQPA SPQPLRHQQM ISFGASSPPY CAAQSFLVPA ESAQHQHQLL  180
RYWSEALNLS PRGGPAMPPS MYQQLLLQAP PPPPPQKLYR GVRQRHWGKW VAEIRLPRNR  240
TRLWLGTFDS AEDAAMAYDR EAFKLRGENA RLNFPDRFLA KGRAGGSGRT SASSAAASAS  300
TAAAASCSSS SSSPPQASDE APFNTQQQQQ QQAEGTTSFE NQLQQHPLSP TATTIQETTG  360
SSRDAATAPY SAEMFHASAV ASSSGGAMWA PPDEAWFNAW GPGSSFWDYD MEDDGARGLF  420
LHPRFSGDDA GVVHSGAQEI AAGTSGTPWP CPCDDDVPVI SSSAPPPPPP PPPPETAQAP  480
SLMWKQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-19217277465ATERF1
3gcc_A1e-19217277465ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g16450.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581450.10.0ethylene-responsive transcription factor ERF053
TrEMBLI1IZX40.0I1IZX4_BRADI; Uncharacterized protein
STRINGBRADI5G16450.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36913268
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28140.12e-33ERF family protein