PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi5g16270.1.p | ||||||||
Common Name | BRADI_5g16270, LOC100828254 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | TCP | ||||||||
Protein Properties | Length: 203aa MW: 21532.3 Da PI: 10.107 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 110.6 | 2.3e-34 | 51 | 165 | 4 | 89 |
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.sec..eaesssssas.nsssg.... 88 +k +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++t+eWLl+qa+p+i ++tg+++++a +c +++s+s + ++ + Bradi5g16270.1.p 51 AKAGGKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTVEWLLRQAEPSILAATGSGTTPAvFSCssAPSASVSLLGkRPR-Edqep 142 677789********************************************************8888844444422222222222222.13444 PP TCP 89 ......................k 89 + Bradi5g16270.1.p 143 apssfwealqarptmawglspsQ 165 55555666544333333333321 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.3E-29 | 54 | 139 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.932 | 55 | 109 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MASPDAAATF QLYRPMSTSM PTPTPTPQTM TLPFSSEGGD AVVPASTRKP AKAGGKDRHS 60 KVNGRGRRVR MPIVCAARVF QLTRELGLKS DGQTVEWLLR QAEPSILAAT GSGTTPAVFS 120 CSSAPSASVS LLGKRPREDQ EPAPSSFWEA LQARPTMAWG LSPSQEAQAY ASVAHQGHVH 180 HHHLNLLSTL SGAARPPEEE SR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi5g16270.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK359408 | 1e-133 | AK359408.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1096D21. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003580173.1 | 1e-146 | transcription factor TCP21 | ||||
Swissprot | Q9FMX2 | 4e-38 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | I1IZV3 | 1e-144 | I1IZV3_BRADI; Uncharacterized protein | ||||
STRING | BRADI5G16270.1 | 1e-145 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1941 | 33 | 100 | Representative plant | OGRP922 | 14 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08330.1 | 5e-35 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi5g16270.1.p |
Entrez Gene | 100828254 |