PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g15904.1.p
Common NameBRADI_5g15904, LOC100846263
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 716aa    MW: 76459.8 Da    PI: 6.5082
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g15904.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3711.5e-22126232199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-. CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld. 85 
                       f k+lt+sd+++ g +++p+ +ae++        +++ +   + ++d +g+++++++iyr++++r++lt+GW++Fv++++L +gD+vvF +  
  Bradi5g15904.1.p 126 FAKTLTQSDANNGGGFSVPRFCAETIfpaldygAEPPVQ--SIFVRDVHGEEFKFRHIYRGTPRRHLLTTGWSNFVNQKKLLAGDSVVFLRAs 216
                       89*********************999*****96555556..6***********************************************9443 PP

                       SS..SEE..EEEEE-S CS
                B3  86 gr..sefelvvkvfrk 99 
                       g+   ++e +v+++r+
  Bradi5g15904.1.p 217 GEggGGGEVHVGIRRA 232
                       3224889999999986 PP
2Auxin_resp114.78.5e-38286369183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                       aa+ a+ ++vFevvY+Prast+eF+v++  v++a++v++++GmRfkmafetedss++++ +Gtv+gv ++dpv+Wp+S+Wr+L+
  Bradi5g15904.1.p 286 AARLAAAGQVFEVVYYPRASTPEFCVRAGAVKAAMQVRWCPGMRFKMAFETEDSSRISWfMGTVAGVCAADPVHWPQSPWRLLQ 369
                       678999****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-32118234IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.01E-27118220IPR015300DNA-binding pseudobarrel domain
CDDcd100179.58E-18125212No hitNo description
PfamPF023622.3E-20126232IPR003340B3 DNA binding domain
SMARTSM010192.0E-16126233IPR003340B3 DNA binding domain
PROSITE profilePS5086311.279126233IPR003340B3 DNA binding domain
PfamPF065076.1E-33286369IPR010525Auxin response factor
PROSITE profilePS5174516.742635713IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MLTFTELACP AGSSAADDAV DSQLWLACAG SMCSVPPVGA AVYYFPQGHA EQAAGAGAVD  60
MPRVPDLVPC RVSAVRFMAD PQSDEVFAKI RLLPLRRGEP VADVGEAAAA REPLQQDADN  120
NKPASFAKTL TQSDANNGGG FSVPRFCAET IFPALDYGAE PPVQSIFVRD VHGEEFKFRH  180
IYRGTPRRHL LTTGWSNFVN QKKLLAGDSV VFLRASGEGG GGGEVHVGIR RARRVFCGAD  240
VEGPSSAASG WDHYRGLMRG NASSGNDGGG KGNNNNKVTA EDVAAAARLA AAGQVFEVVY  300
YPRASTPEFC VRAGAVKAAM QVRWCPGMRF KMAFETEDSS RISWFMGTVA GVCAADPVHW  360
PQSPWRLLQV SWDEPELLQN VKRVCPWLVE LVSSMPNLHL PSFSPPRKKP RIPTCADFPL  420
DGSHFFLQPP FAPLGLNPSS LAQHGHHGFS FFPFPGSGGT PPAPAPLAGG IQGARHAHFG  480
PSPSSVDLRN SKHPRSSLRP HTDIRHPAAP ALVVAPCAPG ISTDLTIGNG TSSVREDDVA  540
TCALPKAPPT LQLFGQEILT EEQMMKASSN TGGLTLTSSP NSETEKAADV SEGSDSVVTQ  600
GSTSSNNNNS TSSWRLRWFG DNGSGQASEL LGLQPGQCKV FVESDAIGRN LDLSQLSSFE  660
ELYSRMSDMF DIESAELRNN VHYRSAAGEV KNVGDEPFRA FVKSARRLTI FAEAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A9e-761939050388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g15904.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3641441e-143AK364144.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2022B20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580146.10.0auxin response factor 8
SwissprotQ6K2230.0ARFH_ORYSJ; Auxin response factor 8
TrEMBLI1IZQ90.0I1IZQ9_BRADI; Auxin response factor
STRINGBRADI5G15904.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Representative plantOGRP5261578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.11e-173auxin response factor 10