PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g15230.1.p
Common NameBRADI_5g15230, LOC100837354
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 394aa    MW: 43819.9 Da    PI: 8.0194
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g15230.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM22.82.5e-07641877127
               NAM   7 FhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLp.kkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                       F+P  +++v +yL  + + +   l + i+++d+y + +P  L      a+++ e  fF++r +++a g r++ra   g  +   ++k      
  Bradi5g15230.1.p  64 FDPAPDDIVGRYLPLRRALRCDGLPRQIHDADVYGAhHPAFLAaVYPPANDRfERLFFACRGREHA-GGRQRRAGP-GAYRLASETKLPGL-- 152
                       9***********976655555555557******97549****83333345556899****999875.889999855.66665555444433.. PP

               NAM  97 gelvglkktLvfy.....kgrapkgektdWvmheyr 127
                              + + +y     +  ++++++t+W m+e+ 
  Bradi5g15230.1.p 153 -GGSAYCHAFRYYedaagSSGSETAKETEWRMDEFC 187
                       .335677899***66654345566789*******95 PP
2NAM331.8e-1023835814127
               NAM  14 lvveyLkkkvegkklele.evikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknr..atksgyWkatgkdkevlskkgelvg 101
                       lv+ yL     g++ ++  +++++v ++ ++P  L +   v++++ ew+f ++r+k++a+g++++r   +  g      + +  +s ++ +vg
  Bradi5g15230.1.p 238 LVQLYLDSLKLGDPRRCRmHAMDDVFVCGAHPAVLTAafPVANDRCEWFFAAPRRKRAANGDEEERprRAGPGAYVPVREFRVAKSGEDGDVG 330
                       899999998888885553055**************85234444555**********99999877773234567888888877777778899** PP

               NAM 102 lkktLvfy..kgrapkgektdWvmheyr 127
                        ++++ +   + + ++ ++t+W m+ey 
  Bradi5g15230.1.p 331 YRRVFRYRddDSTLRRVSRTEWWMEEYG 358
                       *******94434567888*********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100512.71958209IPR003441NAC domain
SuperFamilySSF1019413.4E-1363207IPR003441NAC domain
PROSITE profilePS5100516.032225387IPR003441NAC domain
SuperFamilySSF1019413.53E-18236387IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MAASSSSSNV RGLEETDDGW VLLPPVAANK PRTRDKPPRT PPPRPHTTTP SPSTSTASGY  60
ESAFDPAPDD IVGRYLPLRR ALRCDGLPRQ IHDADVYGAH HPAFLAAVYP PANDRFERLF  120
FACRGREHAG GRQRRAGPGA YRLASETKLP GLGGSAYCHA FRYYEDAAGS SGSETAKETE  180
WRMDEFCDDH RGSASGAAFD MVVCKVYTAR GGAVHRRLQL ASHSHSRRDA NNNKPQVLVQ  240
LYLDSLKLGD PRRCRMHAMD DVFVCGAHPA VLTAAFPVAN DRCEWFFAAP RRKRAANGDE  300
EERPRRAGPG AYVPVREFRV AKSGEDGDVG YRRVFRYRDD DSTLRRVSRT EWWMEEYGFG  360
KDFPYGDLPG VGDEEEEELV VYKLYMKMAG DRA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g15230.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3635497e-63AK363549.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2016J09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581408.10.0uncharacterized protein LOC100837354
TrEMBLI1IZH70.0I1IZH7_BRADI; Uncharacterized protein
STRINGBRADI5G15230.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147671819
Representative plantOGRP1481644