PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g14960.1.p
Common NameBRADI_5g14960
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 690aa    MW: 71591.2 Da    PI: 6.4418
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g14960.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2461.3e-14285344155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++gr++A+++d  +   g  ++ k+++lg ++ +++Aa+a++ a++k++g
  Bradi5g14960.1.p 285 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgKQVYLGGYDKEDKAARAYDLAALKYWG 344
                       57*******************666664478446**********99*************98 PP
2AP251.42.7e-16387438155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Bradi5g14960.1.p 387 SKYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFTTEEEAAEAYDIAAIKFRG 438
                       89****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.68E-17285354No hitNo description
PfamPF008472.8E-11285344IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-16285354IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-13286352IPR001471AP2/ERF domain
SMARTSM003804.3E-27286358IPR001471AP2/ERF domain
PROSITE profilePS5103218.202286352IPR001471AP2/ERF domain
PRINTSPR003673.8E-6287298IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-18387448IPR016177DNA-binding domain
CDDcd000184.51E-22387448No hitNo description
PfamPF008475.0E-10387438IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-18388447IPR001471AP2/ERF domain
PROSITE profilePS5103219.493388446IPR001471AP2/ERF domain
SMARTSM003803.7E-31388452IPR001471AP2/ERF domain
PRINTSPR003673.8E-6428448IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MASANNWLGF SLSGQGNSQA PPAAAAIDVS GAGDFYGLQA QSAPDAHLGM PGLRADANYG  60
VMDAFNGGGQ ETQDWAMRGL DYHGGSSELS MLVGSSSGRM TVDDGGAPKL EDFLGGGNSF  120
SDVQDQTGGY LFSGAGATMG SGADQAAAHS VDGRGGGSTI ELSMIKSWLR NDNQAHAQPD  180
QEMSSTDVAS AASYACPGAL GNGNGVGAGA ASARGGQQAG ALALSMSMGS HHAHSQLSVV  240
AAAAGGGGGA AESTSSDNKR VDSPSAGAAD AGQRKSIDTF GQRTSIYRGV TRHRWTGRYE  300
AHLWDNSCRR EGQTRKGKQV YLGGYDKEDK AARAYDLAAL KYWGTTTTTN IPISTYEKEI  360
EEMKHMTRQE YIAYLRRNSS GFSRGASKYR GVTRHHQQGR WQARIGRVAG NKDLYLGTFT  420
TEEEAAEAYD IAAIKFRGLN AVTNFEMSRY DVKSILEGST LPVGGAARRL KEAAELAEAG  480
VWRAEDGSIV SHLTHADGGI GIGMGGTPYH GWPTSIAFGG HGQLMHASPA AQALAVHYPP  540
YGAGWCKPEQ DAVIAAAGHG VHDSSQGQGQ ELHLGTHNFF HPAARSSYSN GTGGGWYQGV  600
NGNGYLMPQV GTVVDADNVQ GHSGSTATTN EEGRLMAAAG YGDGGGGVDP YAAMRRAYEL  660
SQGSSSSVSV AKVADGYSNN WSSPFNGMG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g14960.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3640300.0AK364030.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2020P23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580093.10.0AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A2K2CHA20.0A0A2K2CHA2_BRADI; Uncharacterized protein
STRINGBRADI5G14960.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.11e-112AP2 family protein