PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi5g14163.2.p

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 407aa MW: 47232.4 Da PI: 6.027

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi5g14163.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	49.6	1.3e-15	43	133	1	87
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 k+Y +YA+ GF +r+++ +++ ++g i + ++vC+k gk++ k++ + err++++ r++Ck l++k+ dg+++v ++ Hn Bradi5g14163.2.p 43 KYYLNYAQWHGFGIRIDYARQT-NDGVISRGRLVCTKAGKDNMVKEDtqkpksVVPERRRNTTVRIDCKSLLRLKRV-DGNYKVVEFIDTHNL 133 69*************98887.9999**********999888888888889999************99.************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.6E-13	43	134	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.1E-15	240	308	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MGDEIMYGQD EEEMCDDGND DDISAPKAPS CDMTFESSKA AQKYYLNYAQ WHGFGIRIDY 60 ARQTNDGVIS RGRLVCTKAG KDNMVKEDTQ KPKSVVPERR RNTTVRIDCK SLLRLKRVDG 120 NYKVVEFIDT HNLPIIKKFN LVKYMRSHRD ISPEEREFLR ILHRANVTTS RMMQIMAGIH 180 KSPHNVTYTR KDVANFRESV RREHNITDIE DTLAYFQELK SEDGDFFFSI QLDEESRVMN 240 LFWMPCAPFI GINNHGMSVQ FGCGFLRNED TMSFAWLFNT FLEAMDGLAP INIITDQDFA 300 MRAGIESAHE KLGAFMGAHE DLHLEMNDCL NNSYNPGEFE HKWTSMIARY GVQDHVDLNA 360 LWEKRASWIP AYFMQNFFPF LQSTQHTEGF NAVLKRYVNP SSLLYNF

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MGDEIMYGQD EEEMCDDGND DDISAPKAPS CDMTFESSKA AQKYYLNYAQ WHGFGIRIDY  60
ARQTNDGVIS RGRLVCTKAG KDNMVKEDTQ KPKSVVPERR RNTTVRIDCK SLLRLKRVDG  120
NYKVVEFIDT HNLPIIKKFN LVKYMRSHRD ISPEEREFLR ILHRANVTTS RMMQIMAGIH  180
KSPHNVTYTR KDVANFRESV RREHNITDIE DTLAYFQELK SEDGDFFFSI QLDEESRVMN  240
LFWMPCAPFI GINNHGMSVQ FGCGFLRNED TMSFAWLFNT FLEAMDGLAP INIITDQDFA  300
MRAGIESAHE KLGAFMGAHE DLHLEMNDCL NNSYNPGEFE HKWTSMIARY GVQDHVDLNA  360
LWEKRASWIP AYFMQNFFPF LQSTQHTEGF NAVLKRYVNP SSLLYNF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi5g14163.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010231561.1	1e-164	protein FAR1-RELATED SEQUENCE 5 isoform X3
TrEMBL	A0A2K2CH37	0.0	A0A2K2CH37_BRADI; Uncharacterized protein (Fragment)
STRING	BRADI5G14050.1	1e-142	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-56	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Bradi5g14163.2.p