PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g14050.1.p
Common NameBRADI_5g14050
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 330aa    MW: 36824.5 Da    PI: 6.183
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g14050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR157.93.4e-18152243289
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                       +Y +YA+  GF vr+++ +++ ++g i++ ++vC+k gk++  k++       + err++++ rt+Ck  l++k+  dg+++v ++   HnH+
  Bradi5g14050.1.p 152 YYLNYARWHGFGVRIDYARQT-NDGVIIRGRLVCTKAGKDTVVKEDtqkpksVVPERRRNTTMRTDCKSLLMLKRV-DGNYKVVEFFDTHNHP 242
                       8***************98887.9999*************9988888778888889999****************99.***************9 PP

              FAR1  89 l 89 
                       +
  Bradi5g14050.1.p 243 I 243
                       7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.7E-16152244IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0010018Biological Processfar-red light signaling pathway
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEQNGDPFES VWNAPFMTPI IALSSDYDAI NSSAPLMPLL QQVINEGTVA GGQPWELHSN  60
TWNIAPAGGL QSTTDSYLIG LSTVAAHGGS VAATDGDASG TNVEASTGMA DEIMYDQDEE  120
EMCDDGSDDD ISAPKAPSCD MTFESFKAAQ AYYLNYARWH GFGVRIDYAR QTNDGVIIRG  180
RLVCTKAGKD TVVKEDTQKP KSVVPERRRN TTMRTDCKSL LMLKRVDGNY KVVEFFDTHN  240
HPIIKKFNLV KYMRSHRDIP LEEREFLRIL HRANVTTSRM MQIMAGIHKS LHNVTYTRKD  300
VANFRASVRR EHSITDIQDT LAYFQVLKS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g14050.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLI1IZ340.0I1IZ34_BRADI; Uncharacterized protein
STRINGBRADI5G14050.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP9528843
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.13e-15FAR1 family protein